Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01251 ATGGAGAATGACCCACCAATGATGAGCCGCCCTTCGCCGAAGCTCAAAACGCAACCAGAACTCGTTCTAACCTTCGCCGGAAATCGTCCAAATGCTTTTCAGAATAACTTAGGTCTTATAATTCCTACCCTGAATGCCAATGTCTTGGAGAAAGATGATTATTGGCAGAACCATGTCAACGACTTCGATTCTTATTGGCAGGAAAGGGCAAAAACAGCTAAAAAGAACAGCGAGGCAGCTTATTTTCAAGATCCGTATTCACTCTCCGGCAACCTGACTTCCAGTGTCAGCGAGCTTCTAGTTGGAAAGAACGCACGAAGGAACTTGAGGGGGCGAAACCGAGGAGCAGAATGCATGGCCACGAACCCCATCGACAGGTGCTGGAGGTGTGACCCTAACTGGGCCGAAGACCGCCAGAAGCTTGCAGATTGCGTGCAGGGATTCGGCAGAAACACGGTCGGAGGCAAAGGTGGTCCAATCTACGTTGTCACAGATCCCTCAGACGATGAATTGATAGACCTAAAACCTGGGACTCTCCGGCACGCGGTGACACGAGAGGGTCCACTGTGGATCATCTTCGCACGCAGCATGCTCATCACGCTCAAGCAGGAGCTCATCATGAACAGCAACAAGACCATCGACGGAAGAGGAGTTGAGGTTTACATCGCCAATGGCGCTGGCCTCACTGTTCAGTTTGTCAGTAACATCATCATCCATGGTATCAAGATCTACGACATTCAGCCCGGTGAGGGTGGCATTATCAGAGACTCTGAAACCCATTATGGCCAAAGGACAAGGAGTGATGGTGATGGGATCTCCGTCTTTGGTGCTAGCAATATTTGGATCGACCACGTTTCCATGAGAAACTGCTCCGATGGACTCATTGATGTCATCATGGCATCCACTGCTATCACCATTTCCAACAGCCATTTCACCGATCACAACGAGGCGATGTTGTTTGGTGCCCGTGACGAATGCACAATTGATAAGATCATGCAAGTCACTCTTGCATTCAACCACTTTGGCAAAAGATTAGTTCAAAGGATGCCCAGAGTCAGATTTGGTTTTGTGCATTCCGTTAACAACGACTACACTCACTGGGAAATGTATGCCATTGGTGGCAACCAGAACCCCACCATCATCAGTGAGGGTAACCGATTTATAGGTCCTAACAACAGGTTTGCAAAAGAGATTACAAAGAGAGAATACACGGAAGAGAACATTTGGAAGAACTGGCAGTGGAGATCAATCAACGATGTATACATGAATGGAGCATTTTTTGTGGAATCTGGGCCTGAGCTCGTAAACAGACCCTACTCAAGGCTAGACATGATCACAGCTAAGCCAGCGAGTTATGTAGGAAGGCTTACACGCTTTTCTGGCAGCCTTAGGTGTAGAGTGGGAGAACCTTGTTAA 1416 0.4816 MENDPPMMSRPSPKLKTQPELVLTFAGNRPNAFQNNLGLIIPTLNANVLEKDDYWQNHVNDFDSYWQERAKTAKKNSEAAYFQDPYSLSGNLTSSVSELLVGKNARRNLRGRNRGAECMATNPIDRCWRCDPNWAEDRQKLADCVQGFGRNTVGGKGGPIYVVTDPSDDELIDLKPGTLRHAVTREGPLWIIFARSMLITLKQELIMNSNKTIDGRGVEVYIANGAGLTVQFVSNIIIHGIKIYDIQPGEGGIIRDSETHYGQRTRSDGDGISVFGASNIWIDHVSMRNCSDGLIDVIMASTAITISNSHFTDHNEAMLFGARDECTIDKIMQVTLAFNHFGKRLVQRMPRVRFGFVHSVNNDYTHWEMYAIGGNQNPTIISEGNRFIGPNNRFAKEITKREYTEENIWKNWQWRSINDVYMNGAFFVESGPELVNRPYSRLDMITAKPASYVGRLTRFSGSLRCRVGEPC 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01251 471 Gene3D - 121 464 IPR012334 -
Cca01g01251 471 Pfam Pectate lyase, N terminus 58 109 IPR007524 GO:0030570
Cca01g01251 471 PANTHER PECTATE LYASE 18-RELATED 36 471 IPR045032 GO:0030570
Cca01g01251 471 SUPERFAMILY Pectin lyase-like 122 461 IPR011050 -
Cca01g01251 471 PRINTS Pollen allergen Amb family signature 144 161 IPR018082 -
Cca01g01251 471 PRINTS Pollen allergen Amb family signature 168 193 IPR018082 -
Cca01g01251 471 PRINTS Pollen allergen Amb family signature 204 220 IPR018082 -
Cca01g01251 471 PRINTS Pollen allergen Amb family signature 268 289 IPR018082 -
Cca01g01251 471 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Cca01g01251 471 PRINTS Pollen allergen Amb family signature 370 389 IPR018082 -
Cca01g01251 471 PRINTS Pollen allergen Amb family signature 412 436 IPR018082 -
Cca01g01251 471 PRINTS Pollen allergen Amb family signature 442 465 IPR018082 -
Cca01g01251 471 Pfam Pectate lyase 203 387 IPR002022 -
Cca01g01251 471 SMART amb_all 196 393 IPR002022 -
Cca01g01251 471 PANTHER PECTATE LYASE 36 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01251 Cca-Chr1 21406094 21409835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01251 33 471 Polysaccharide Lyase AT1G14420 57.143 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01251 K01728 - gmx:100798579 737.258