Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01249 atgagcatgatgcatgagttAAGGAGCAGTGGTTTTTCCAGAGGTGTGTCAAAGTATAGAGGAGTAGCAAGGCATCATCACAATGGAAGATGGGAAGCAAGGATTGGAAGAGTGTTTGGCAACAAGTACCTCTACCTTGGGACTTACAGTACACAAGAAGAGGCAGCTCGTGCATATGACATTGCAGCAATTGAATACAGAGGCATAAATGCAGTGACAAACTTTGACTTGAGCACCTACATCAGATGGCTAAGACCAGGAACACATTCTAATATTTCTCAAGATCAAAAGCCTAGCTTAGACCCTCATTCCTTTGCAACCTCTAACTCCATGCAAACAAGAGGGAACATTGAGTTATCCAACACCAACATGCATTCATTCCCCTCAGGTGAATTGGACTGTACCCAGAAGCGAGACTTTTCCAAGTACATGACCCCTTTGAGTCCTTGCAACAAGGCCTCTTCCCCAACAGCGCTAGGACTTCTCCTGAAATCCTCAGTGTTTAGAGAACTGATGCAGAGAAATCTGAACTCTTCTGGTGAAGAAGCTGAAGAAGTTGAACTGAAATACCCTCGAGAGAGCAATGAGGAGGTTGGAGGGATTTATGATAATGACAACACAAGTAACTCTTACTTTTGCTCTTCTAGTATCAACAGATTACCTAATCTGGAGTCATCAGAAGAAAGTTCGTTGCCTATGTATCATAGAACAGTGCAATCCCTATGGAATGGTGCTTTCAACATGTCTAACTGA 753 0.4197 MSMMHELRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGTHSNISQDQKPSLDPHSFATSNSMQTRGNIELSNTNMHSFPSGELDCTQKRDFSKYMTPLSPCNKASSPTALGLLLKSSVFRELMQRNLNSSGEEAEEVELKYPRESNEEVGGIYDNDNTSNSYFCSSSINRLPNLESSEESSLPMYHRTVQSLWNGAFNMSN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01249 250 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 244 - -
Cca01g01249 250 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Cca01g01249 250 SUPERFAMILY DNA-binding domain 17 78 IPR016177 GO:0003677
Cca01g01249 250 Gene3D AP2/ERF domain 17 78 IPR036955 GO:0003700|GO:0006355
Cca01g01249 250 CDD AP2 17 78 IPR001471 GO:0003700|GO:0006355
Cca01g01249 250 Coils Coil 169 189 - -
Cca01g01249 250 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 244 - -
Cca01g01249 250 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Cca01g01249 250 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01249 Cca-Chr1 21273728 21276221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01249 8 122 AP2-EREBP Transcription Factor Family AT1G79700 65.833 1.99e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca01g01249 AP2 4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01249 - - gmx:100798483 424.476