Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01248 ATGATTTCACACAAAGTTCACTTGTTCCGCTCACCATTTCGCGTTCTGGGTTATCCATGCACAAAGCTGCCAAACACGCCTCTCTTGCTTTTGCTGCATGCCAACACAAACGCTTCCTTCTTCCCCTCACCAACCATCCTTTGTTCATCACTCAGTGACGATTCCTTTTCCACCCCAAAACCAAACCAGGCACAGACTCtttttctcttattttattttacatttttttttttGTTGGGTTACAATCCTCCAGAGGAACTGTTCGGGCTGGAGGTGGAACTCAAGCCAAGCAATGCTAATTCTCATTCACCAGAACCAAGGTCCTGGTTTGGACCAAATGGACAGTATATCAGAGAGCTACCTTGTCCAAGTTGCCGGGGAAGGGGTTATACTCCTTGTACCGAGTGTGGAATAGAAAGATCAAGGCCAGACTGTCCAAAATGTTATGGAAAGGGTATACTGACTTGCCACCAGTGCTCTGGGGATTGTGTTATATGGGAGGAATCAATTGATGAACAACCATGGGAGAGGGCTCATTCCATTTCCCCTCTTAAAGTGAAGGAAGATGACGAAGTTGACAAATTAGACATAAAGCTAGAGGTGAAGAAAAAATCCAAGCGCATTTACCAGTCACCACCTCCAGAAGTTGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCCAAAACTGGTCTGTTTAGCAATCGAATGAAGATAATTCACCAGGATCCCAAGCTTGAGGCTCAGCGTGTGGCTGCTATTAAGAAAGCCAAGGGAACTGCTGCAGCAAGAAAGCACACTTCCAAAACCATGAAAGCTTACTTTAGTGATCCAATAAATCGCCAGAAAAGGAGCATGGCCATGAAGGGAGTGAAATTCTACTGCCAAAACTGTGGCCGGGAAGGGCACAGGAGACACTACTGTCCAGAACTCAAGGACAGTTCGATTGATCGGCGATTCACATGCAGGGTCTGTGGGGAAAAAGGCCACAACAGAAGAACATGCAGAAAGTTAAGGATAAGCCATAGCAATGGAAGAATGATAAAACACCATCAGTGTAAAATATGTCACCAATTTGGCCATAACCGCAGGACTTGCCCTCAAGCTGTGCCTAGTAAAAGAAGAAACACTCAAGCTGTACCTAGTAAAAGAAGGAACACGGCCTCTCGAAGAGCATACAGGTGTAGGTTGTGCAAGAAAGAGGGACATAATATTAGGACATGTCCTAGTAGAACAGTTACTGAACATCCTCAAGACTAA 1263 0.4402 MISHKVHLFRSPFRVLGYPCTKLPNTPLLLLLHANTNASFFPSPTILCSSLSDDSFSTPKPNQAQTLFLLFYFTFFFLLGYNPPEELFGLEVELKPSNANSHSPEPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRPDCPKCYGKGILTCHQCSGDCVIWEESIDEQPWERAHSISPLKVKEDDEVDKLDIKLEVKKKSKRIYQSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLEAQRVAAIKKAKGTAAARKHTSKTMKAYFSDPINRQKRSMAMKGVKFYCQNCGREGHRRHYCPELKDSSIDRRFTCRVCGEKGHNRRTCRKLRISHSNGRMIKHHQCKICHQFGHNRRTCPQAVPSKRRNTQAVPSKRRNTASRRAYRCRLCKKEGHNIRTCPSRTVTEHPQD 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01248 420 Gene3D - 349 417 - -
Cca01g01248 420 SUPERFAMILY Retrovirus zinc finger-like domains 293 339 IPR036875 GO:0003676|GO:0008270
Cca01g01248 420 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 78 413 - -
Cca01g01248 420 Gene3D - 290 341 - -
Cca01g01248 420 ProSiteProfiles Zinc finger CCHC-type profile. 296 311 IPR001878 GO:0003676|GO:0008270
Cca01g01248 420 Pfam Zinc knuckle 394 410 IPR025829 -
Cca01g01248 420 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 78 413 - -
Cca01g01248 420 ProSiteProfiles Zinc finger CCHC-type profile. 323 338 IPR001878 GO:0003676|GO:0008270
Cca01g01248 420 SMART c2hcfinal6 353 369 IPR001878 GO:0003676|GO:0008270
Cca01g01248 420 SMART c2hcfinal6 295 311 IPR001878 GO:0003676|GO:0008270
Cca01g01248 420 SMART c2hcfinal6 395 411 IPR001878 GO:0003676|GO:0008270
Cca01g01248 420 SMART c2hcfinal6 322 338 IPR001878 GO:0003676|GO:0008270
Cca01g01248 420 SUPERFAMILY Retrovirus zinc finger-like domains 377 412 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01248 13 416 C2H2 Transcription Factor Family AT5G20220 57.561 3.72e-159 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01248 - - gmx:100800156 694.501