Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01247 ATGTCGAACTTGCAGTTACAGCTtcactcaccaccaccatcactcttatcatcatcttcatctctatcttcttcttcttcttACCTTAAGCCTTTCCCAAACCACACTTTCTCTTCAAAGTTCCTTCCTTTCAACAACACTCCTAAACCCTTCTCCCTCAGATGCCGCCACTCTAACCTCTTCGACCAAAACACCTTAGCCTCCACACAACGTTCTGCAAGACCCTCCGCTTCAGTTGGGGATTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTCACACTGACTCCTAGGCCCCCAGAATTCACACAGCTCGATTCAGGGGCATTCAAAATATCTAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCTGCGGTTGGTGTGCGCCAATATGATTGGAATAGAAAGCAGGTGTTTTCCTTATCAGTGGGTGAAATGGGAAGTTTGATTAGCCTTGGTCCAAGGGAGTCTTGTGAATTTTTTCATGATCCTTTGAAGGGTAAAAGTGACGAAGGTAAAGTTAGAAAAGTTTTGAAGTTGGAGCCTCTACCAGATGGTTCTGGACACTTCTTTAACCTCAGTGTTCAAAACAAGCTTGTGAACGTGGATGAGAACATCTTTATTCCTGTTACAAAAGCAGAGTTAGCAGTTTTGAACTCAACTTTCAATTATATCATGCCATACCTTCTGGGTTGGCATACCTTTGCAAACTCCATAAAGCCAGATGATTATAGTGAAACGAATAATGCCAACCCAAGATATGGAGGAGACTATGAATGGAACAGATAG 807 0.4052 MSNLQLQLHSPPPSLLSSSSSLSSSSSYLKPFPNHTFSSKFLPFNNTPKPFSLRCRHSNLFDQNTLASTQRSARPSASVGDLPPRVYVGYSIYKGKAALTLTPRPPEFTQLDSGAFKISKEGYVLLQFAPAVGVRQYDWNRKQVFSLSVGEMGSLISLGPRESCEFFHDPLKGKSDEGKVRKVLKLEPLPDGSGHFFNLSVQNKLVNVDENIFIPVTKAELAVLNSTFNYIMPYLLGWHTFANSIKPDDYSETNNANPRYGGDYEWNR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01247 268 Gene3D Transcriptional Coactivator Pc4; Chain A 80 257 IPR009044 GO:0003677|GO:0006355
Cca01g01247 268 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 5 268 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cca01g01247 268 Pfam Whirly transcription factor 92 226 IPR013742 GO:0003697|GO:0006355|GO:0006952
Cca01g01247 268 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 5 268 - -
Cca01g01247 268 SUPERFAMILY ssDNA-binding transcriptional regulator domain 84 268 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01247 Cca-Chr1 21229728 21233342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01247 13 268 Whirly Transcription Factor Family AT1G14410 64.844 1.04e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Cca01g01247 Whirly 7.5e-61 CL0609