Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01245 ATGGAAGTTGACCAGAATGAAGAAATTAATGGCAACAAGGATCATAAGCGTAAATGGGAAATGGGAGAGGTTGGAGAAGGAAACGATAGCTTGAAACTTTCATTGGCAAGGCATGTAAAGGATACAAGTAGTGATGAAGAAATTGGACTTGTCTCACTTTCTCTTGGAATTTCATCCACAAGCCAACATGAGATGAAAAATAGCAATATTAATAGAAGTGCAAAGATCAGACAAATTGAGGGTTTGAAAGAAGGACCTGCATTAGGATTAGATATCAGAGTTGACCCTTCAGCAGTAAAAAGTCCAAGCACTGAAAGTAGCTGTTATGGGGAAAGGAAGGAAGAGGAACTTAGAGAGATATGGCCACCCAATAAAGTTCTCAAGACAATAATAACTGGGGATAAAAGTGAAACTTCTCAACATGCTCTACTCAAGAAGGCTAGGGTTTGTATTAGAGCCAAATGTGATACCCTTACGATGAATGATGGATGCCAGTGGAGAAAATATGGACAGAAAATGGCGAAAGGAAATCCGTGTCCCAGAGCATACTATCGATGCACCTTCACTCCATCTTGTCCAGTGAGAAAACAGGTTCAAAGATGTGCCGAAGACATGTCAATCTTGATTACTACCTATGAAGGAACCCACAACCACCCTCTTCCTACTTCAGCCACAGCCATAGCCCACACAACTTCTGCAGCTGCTTCCATGCTTCAGTGTCACTCGCAATTAGGACTAGTCAATTCAGATTCAGTCCCCCTCATCAATTCTAGTGTTCCTTATAACCTCAATGCACTAAACTTCACAACATCAAGCTATCAACACTTTTCAAGATCACAACAATTATATTTCCCCCACTCACCATACATTTCAACCTCTAATTCTCACCCCACCATCACTTTTGATCTCACCACTCCTCAAACTTCACCTCATACACCCTTCTCTTTCATACCAAAATATTCATCAACACATCTTAATTCTTCCTCAAGTACTTTCTCTCCTTTGGAATCTAATATACCACAGTCACCTTATTTGAGTCCTTATAGTGGTTACTTCAATTATGAGGGATTGATCTCACAACATAAGAAACAACATGGTTCCATTATGAACACTGGAAAACAACCATTTCAAGAGCATATCTGTCAACCTAATTACATTATTAATCAACAACCTTTACCTGATTCTATTGTAGCTGCAACCAAGGCAATCAAGTCTACCCCAAAATTTCAATCTACTTTAGCAACTGCTCTCACAGCGTATGTTGGTAATGGGGTAAGAGGAAATCATGTTGGGGCCCAGAGTACACTTTTGGACTTAAACCTTGGTGGAGATACGTTTTACTCAACGAACACAGTTTACACTTCTAATGCATCAAGGTACAGGAGAATATCATCTTCTACTCCTAATGCTCCAAAAGGAAACTCGGTCATTTTTCAACCATCACAAGCATCTGAAAGTTCCTTTGGATTGTCGTCTAATAAAGTAAACCATTCTTAG 1497 0.3968 MEVDQNEEINGNKDHKRKWEMGEVGEGNDSLKLSLARHVKDTSSDEEIGLVSLSLGISSTSQHEMKNSNINRSAKIRQIEGLKEGPALGLDIRVDPSAVKSPSTESSCYGERKEEELREIWPPNKVLKTIITGDKSETSQHALLKKARVCIRAKCDTLTMNDGCQWRKYGQKMAKGNPCPRAYYRCTFTPSCPVRKQVQRCAEDMSILITTYEGTHNHPLPTSATAIAHTTSAAASMLQCHSQLGLVNSDSVPLINSSVPYNLNALNFTTSSYQHFSRSQQLYFPHSPYISTSNSHPTITFDLTTPQTSPHTPFSFIPKYSSTHLNSSSSTFSPLESNIPQSPYLSPYSGYFNYEGLISQHKKQHGSIMNTGKQPFQEHICQPNYIINQQPLPDSIVAATKAIKSTPKFQSTLATALTAYVGNGVRGNHVGAQSTLLDLNLGGDTFYSTNTVYTSNASRYRRISSSTPNAPKGNSVIFQPSQASESSFGLSSNKVNHS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01245 498 Pfam WRKY DNA -binding domain 161 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01245 498 Gene3D WRKY domain 145 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g01245 498 PANTHER WRKY TRANSCRIPTION FACTOR 72B 1 486 - -
Cca01g01245 498 SMART WRKY_cls 160 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01245 498 MobiDBLite consensus disorder prediction 464 498 - -
Cca01g01245 498 MobiDBLite consensus disorder prediction 1 23 - -
Cca01g01245 498 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 486 IPR044810 GO:0003700
Cca01g01245 498 ProSiteProfiles WRKY domain profile. 155 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01245 498 SUPERFAMILY WRKY DNA-binding domain 154 221 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01245 Cca-Chr1 21105426 21112957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01245 24 429 WRKY Transcription Factor Family AT1G18860 36.761 1.48e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca01g01245 WRKY 2.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01245 - - ccaj:109812486 987.638