Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01242 ATGGGAAGACAAAGTCCTGGAAAATGGATCAGAAACTTACTTCTGGGGAAGAAATCATCATCAAAGTCCAAGTCTTCTAGAGAGAAACATATTTATAAACCTTCAAGTAACAAGGATGTTCTGGTGGTGTCTTCCGAGGCATCCATGTCTACTCCAACATCTGGAGCTAATAATGCTACTAAAGGAGTGCTATCAGAAAAGGAAGTAGTTAGTATATCATCAAATGCACGATCTCTTTCTAATTTTGGTTCTGGGGACCATCATGAGAAAATCAAGCTAATAAAAGCAGCGATAATAGTTCAGGCTGCTATCAGAGGCTATCAGGCGCGTGGGACATTTAAAACTCTCAAAGGTATCATACCACTACAAGCTTATATTCGTGGCCACTTGGTTCGAAGACAAGCTATTTCTGCTTTATATTGTGTGAAGTCAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAAGGTTAGGCACTCTGATATTGGGCTTGCAGTTCAGAAAATTTTTAAGGATACTAAATTTCCAAATTCAATTGGAGTAGTTACATCCACACAGGCAATGATGCTCTCAGATAATATCTTTGTTCACAAGCTTCTGGCATCATCACCCTCTGTGGTTTCTCCATATCTCAAACACAATGCTGGTGAACCTAACTTGGCTTGGGAGTGGCTTAGCCGCTGGACGAAATCACACTTTTGGCTACCTCTTCCAGAAGTGCAGAAACCTGATTCAATGTCTGATAAGAAAAATGGAAGCTGTCAAACAACTGAAACTAAAGAGGGACAAGTCAAAAGAAATGCCAAGATAGCACCTGCTGTGAGGGTTGGTGATGATTCAGTTTCAGATTCTAACAAACATAAACGGTCTCCCAAAAAGGATTCAAACCTCCCATTGCATTCATCCAAGGAACATCCACAAAAGGAACATGAGAAAAGAAGTTCCAAAAAGTATCAAATTCAGAATGTTTCTAATAAATCCGAGGTTGCTACCAAGAAGAGAACACACATCACAAGAAAAGTTTCACATCATGCAGTTAATGATGTTCCAGAGGAAGATGCTAGTGCTTCTCCAGAGACGATGAAAGATTTGTCAATGTCAAAGTTAAAACAGTCTGACATTGAGAAAAGTCTAGGAGATCAAGCAGAAGAGAATGAAAATGAGTCATGTAATGATACTAATCCTCACTTGCAATCTAGTTTGATGAATGTAAAAGATGGAGGAGTCATTGAGGACTTTAATGATGGTGAAAATTGTATCAACAATGTAAACTCTAAGAATTTCCAGAGAAGAGCTTCCCTACCTGCTAATTTTTCAGATCATGAAAATGTGTTACATAGTAACACTCCAAGAGCACTTCCCAGTTATATGGCTCCAACTGAATCTACAAAAGCCAAGCTAAGAGGCCAATGCTCTCCAAGGTCTGCTAGTGATTTGGTAGATGTAAACAGTTTAACTCGGCGGCTTTCACTTTCATCTTCGCTTAATGGCAAATTAGGTCCATTCTCTCCACGAGCAGATAGATTGGCAGTCTTGAGCAGCAAAGGAATGATGAGGACTGACAGATCTCTATCATCTTCTAGGGATGGAACTGATAAGTTGACCCAACCTCAGTGGCGAAGGTGA 1626 0.3979 MGRQSPGKWIRNLLLGKKSSSKSKSSREKHIYKPSSNKDVLVVSSEASMSTPTSGANNATKGVLSEKEVVSISSNARSLSNFGSGDHHEKIKLIKAAIIVQAAIRGYQARGTFKTLKGIIPLQAYIRGHLVRRQAISALYCVKSIVKFQALARGYKVRHSDIGLAVQKIFKDTKFPNSIGVVTSTQAMMLSDNIFVHKLLASSPSVVSPYLKHNAGEPNLAWEWLSRWTKSHFWLPLPEVQKPDSMSDKKNGSCQTTETKEGQVKRNAKIAPAVRVGDDSVSDSNKHKRSPKKDSNLPLHSSKEHPQKEHEKRSSKKYQIQNVSNKSEVATKKRTHITRKVSHHAVNDVPEEDASASPETMKDLSMSKLKQSDIEKSLGDQAEENENESCNDTNPHLQSSLMNVKDGGVIEDFNDGENCINNVNSKNFQRRASLPANFSDHENVLHSNTPRALPSYMAPTESTKAKLRGQCSPRSASDLVDVNSLTRRLSLSSSLNGKLGPFSPRADRLAVLSSKGMMRTDRSLSSSRDGTDKLTQPQWRR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01242 541 MobiDBLite consensus disorder prediction 21 35 - -
Cca01g01242 541 MobiDBLite consensus disorder prediction 1 37 - -
Cca01g01242 541 Pfam Protein of unknown function (DUF4005) 445 519 IPR025064 -
Cca01g01242 541 Gene3D - 119 160 - -
Cca01g01242 541 SMART iq_5 140 162 IPR000048 GO:0005515
Cca01g01242 541 SMART iq_5 92 114 IPR000048 GO:0005515
Cca01g01242 541 SMART iq_5 115 136 IPR000048 GO:0005515
Cca01g01242 541 MobiDBLite consensus disorder prediction 513 541 - -
Cca01g01242 541 ProSiteProfiles IQ motif profile. 93 117 IPR000048 GO:0005515
Cca01g01242 541 MobiDBLite consensus disorder prediction 280 317 - -
Cca01g01242 541 MobiDBLite consensus disorder prediction 247 261 - -
Cca01g01242 541 PANTHER IQ-DOMAIN 5-RELATED 1 538 - -
Cca01g01242 541 ProSiteProfiles IQ motif profile. 117 144 IPR000048 GO:0005515
Cca01g01242 541 MobiDBLite consensus disorder prediction 239 400 - -
Cca01g01242 541 Pfam IQ calmodulin-binding motif 143 158 IPR000048 GO:0005515
Cca01g01242 541 Pfam IQ calmodulin-binding motif 122 134 IPR000048 GO:0005515
Cca01g01242 541 Pfam IQ calmodulin-binding motif 95 110 IPR000048 GO:0005515
Cca01g01242 541 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 538 - -
Cca01g01242 541 MobiDBLite consensus disorder prediction 366 383 - -
Cca01g01242 541 MobiDBLite consensus disorder prediction 329 358 - -
Cca01g01242 541 MobiDBLite consensus disorder prediction 518 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01242 Cca-Chr1 21034991 21040235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01242 1 541 IQD Protein Family AT1G14380 35.167 6.50e-73 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01242 - - gmx:100800688 788.104