Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01241 ATGGGAAGACAAAGCCCTGGAAAATGGATCAGAAGCTTACTTCCGGGGAAGAAATCATCATCAAAGTCTAAGTCCTCTAGAGAGAAATATATTTATGCATCCATGTCTACACCAACATCTGAAGCTAATGCAACTAAAGAAGTGCTATTGGAAAAGGAAGTAGCTAGTATATCATCCAATGATGGGGTAAGTTTTTCAACTGAAGACCAACAAGTCAATACACAATCTCTCACTAGTTATGGTTCTGGGGACCATCATGAGAAAATCATGCTTAATGAAGCAGCTATAATAGTTCAGGCTGCTATTAGAGGCTATCAGGCACGTGGGACTTTCAAAACTCTCAAAGGTATCACGACACTGCAAGCTTACATTCGAGGCCAGTTGGTTCGACGACAAGCTGTTTCTGCTTTATATTGTGTGAAATCAATAGTTAAATTTCAAGCATTGGCTCGTGCTTACAAGGTTAGGCACTCTAGTATTGGCCTTGCAGTCCAGAAAATTTTCAAGGATACCAAATTTCCAAATTCTGTTGTAGTTACATCCACACAGGCATCAAAGCTCTCAGATAATATCTTCGTTCACAAGCTTCTGGCTTCAACACCCTCTGTGGATTCTCCATATCTCAACTATAATGCTGGTGAACCTAACTTGGCTTATGAGTGGCTTAACCGTTGGACGATATCACAGTTTTGGATACCTCTTCCAGAAGCAAAGAAACCTGATTCAATGTCTAACAAGATAAATAGCAGTTATCTAATAATTGAAACTAATAAGGGCCGAATCAAAAGAAATGCCAGGAAAGCACCTTCTCTGAGGATTGGTGATGATATAGTTTCAGATTCTAACAAACATGAAGGGTATCCAAAAAAGGACTCAAACCTCCCATTGCATTCAGCTAAGAGACATCCACAAAAGGAACTTGAGAAAACAGGTTCTAAAAAAAGCCAAATTCAGCATGTTCCTGATAAATCCGAGGTTGCTATTGAGAAAAAAACACACATTACCAAAAAAGTTTCCTATCATATAGTGAATGATGTTCCAAGGGAAGATGCATATGCTAGTGCTTCTTCAAAGAAGATAGTAGATTTGGCAGTGTTGAAGTCTAAACAGTCTGATATTGAGAAGAGTCTTGAACAGCAAGCAAAAGAGCATGATAATGAGACATGTAATGATACTAATGCTTACTTGAAGAGAAGAGCTTCCCTACCTGCTAATTTTATGGATCATGAAAATGTGTTGCATAACATTCCAAGAGCTCTTCCCAGTTATATGGCTCCAACTGAATCTACAAAAGCTAAGCTAAGAGGACAAGGCTCTCCACAGCCTGCTAGTGATTTGGTGGACATAGATGGTGTAATTCGGCGGCTTTCGTCTTCGTCTACTCTAAATGAGAAGTTAGGTCCTTTCTCTCCACCAGCAGATAGATTGGCTGCCTTGAGCAGCAAAGGAATCATAAAGACTGACAGATCTCTATCATCTTCAAGGAATGGGACTGATAAGTGGAACCAACCTCAGTGGAGAAGGTGA 1527 0.3982 MGRQSPGKWIRSLLPGKKSSSKSKSSREKYIYASMSTPTSEANATKEVLLEKEVASISSNDGVSFSTEDQQVNTQSLTSYGSGDHHEKIMLNEAAIIVQAAIRGYQARGTFKTLKGITTLQAYIRGQLVRRQAVSALYCVKSIVKFQALARAYKVRHSSIGLAVQKIFKDTKFPNSVVVTSTQASKLSDNIFVHKLLASTPSVDSPYLNYNAGEPNLAYEWLNRWTISQFWIPLPEAKKPDSMSNKINSSYLIIETNKGRIKRNARKAPSLRIGDDIVSDSNKHEGYPKKDSNLPLHSAKRHPQKELEKTGSKKSQIQHVPDKSEVAIEKKTHITKKVSYHIVNDVPREDAYASASSKKIVDLAVLKSKQSDIEKSLEQQAKEHDNETCNDTNAYLKRRASLPANFMDHENVLHNIPRALPSYMAPTESTKAKLRGQGSPQPASDLVDIDGVIRRLSSSSTLNEKLGPFSPPADRLAALSSKGIIKTDRSLSSSRNGTDKWNQPQWRR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01241 508 MobiDBLite consensus disorder prediction 485 508 - -
Cca01g01241 508 Pfam Protein of unknown function (DUF4005) 414 465 IPR025064 -
Cca01g01241 508 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 405 505 - -
Cca01g01241 508 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 385 - -
Cca01g01241 508 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515
Cca01g01241 508 Pfam IQ calmodulin-binding motif 141 156 IPR000048 GO:0005515
Cca01g01241 508 Pfam IQ calmodulin-binding motif 93 108 IPR000048 GO:0005515
Cca01g01241 508 MobiDBLite consensus disorder prediction 1 28 - -
Cca01g01241 508 PANTHER IQ-DOMAIN 5-RELATED 1 385 - -
Cca01g01241 508 PANTHER IQ-DOMAIN 5-RELATED 405 505 - -
Cca01g01241 508 MobiDBLite consensus disorder prediction 277 322 - -
Cca01g01241 508 MobiDBLite consensus disorder prediction 273 322 - -
Cca01g01241 508 SMART iq_5 113 134 IPR000048 GO:0005515
Cca01g01241 508 SMART iq_5 138 160 IPR000048 GO:0005515
Cca01g01241 508 SMART iq_5 90 112 IPR000048 GO:0005515
Cca01g01241 508 Gene3D - 89 137 - -
Cca01g01241 508 MobiDBLite consensus disorder prediction 427 447 - -
Cca01g01241 508 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
Cca01g01241 508 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Cca01g01241 508 MobiDBLite consensus disorder prediction 484 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01241 Cca-Chr1 20977670 20983033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01241 1 508 IQD Protein Family AT1G14380 31.104 6.88e-60 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01241 - - ccaj:109802097 991.104