Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01237 ATGAAACACAAAGATATCTTAAGATTTGATGTCACTGTTACTATTCGACATTATGCACATTATGTAGCGCCACGTTTTATGAGAGGATCAACCTCATCCCAAACCTCAATACCCATAACCTGCGAAAGATTCTTAGAAAACAATCATGGTTTTCTACTAAGTGTTATATGTTCCTTGCCTGGTTACGTCCCAGAAAGTTTGATCCAATTAGAACGAAGGATTGTTTTTGAGGTTCAACGAGACTTGGAAGTTGAGAGCAACAGTTGTACGGATTCAAAGTGTCGAGAATTTTCATTGGCTTTGGACATTTTCATAGACGTTGTGCAATATGAAGAGAGAGATGATGAAGAAGATGCAATGATAGAAATAGAAGAGTCCATGCAGCAAGGTGTGGTTATGGTTCCTGCCTCCGATGAAGCCATTCAGTCCTTGAAAGCATTCACAGACTCATCGTTCCTGAAAATCGAAAAGTGCAATATTTGCATGGATAAGTTtgaagttgatgagggtgatgatcaagatgatgTGTTATCAATGCCATGCAACCATGTGTTTCATCGAGAGTGTATTGTCAAATGGTTGCAAACTAGTCACACGTGTCCTTTGTGTCGCTATCCTATGCCCACTGCATATGATTGA 639 0.3756 MKHKDILRFDVTVTIRHYAHYVAPRFMRGSTSSQTSIPITCERFLENNHGFLLSVICSLPGYVPESLIQLERRIVFEVQRDLEVESNSCTDSKCREFSLALDIFIDVVQYEERDDEEDAMIEIEESMQQGVVMVPASDEAIQSLKAFTDSSFLKIEKCNICMDKFEVDEGDDQDDVLSMPCNHVFHRECIVKWLQTSHTCPLCRYPMPTAYD 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01237 212 ProSiteProfiles Zinc finger RING-type profile. 158 204 IPR001841 -
Cca01g01237 212 CDD RING-H2_PA-TM-RING 158 204 - -
Cca01g01237 212 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 86 209 - -
Cca01g01237 212 SUPERFAMILY RING/U-box 157 209 - -
Cca01g01237 212 PANTHER F6A14.12 PROTEIN-RELATED 86 209 - -
Cca01g01237 212 SMART ring_2 158 203 IPR001841 -
Cca01g01237 212 SMART ringv_2 157 204 IPR011016 GO:0008270
Cca01g01237 212 Pfam Ring finger domain 157 204 IPR001841 -
Cca01g01237 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 210 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01237 Cca-Chr1 20888900 20889538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01237 116 208 C3H Transcription Factor Family AT1G18760 31.915 2.50e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01237 - - ccaj:109801196 235.343