Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01234 ATGCAAGATATGAAGCAGAAGCAACAGGGAAATGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACTTGGAGTCAGGAGGAGGATGATATACTTAGAGAGCAGATTGGTATTCATGGAACTGAAAATTGGGCAGTTATTGCATCTAAGTTCAAGGACAAAACGACAAGACAGTGCAGAAGAAGATGGTACACTTACTTGAATTCTGATTTCAAAAAAGGTGGATGGTCAGCTGAGGAAGACATGCTCTTATGTGAGGCACAAAAAATATTTGGTAACAGATGGACGGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACACTCTGCAGAAAGAGAGAAAAATATGCAGCTTTAGCAAAAGAGAACTGCACTTCATACATCAATTCAAATAACAAAAGGATTATCCTCCAACATTATAATAATATGGATACAACATCAGAATCTGGAGTACCTATTGGGAAGATGAGGAGGGCCCATATCCCTGATGATGCAGAAAAGATCAAATTTGGGGACCGATCACATTTACAAAACAGAACTCAAATAAATCAGCAGCCAAGAGCACCATTTGCAGTATTAGCTCAAAACTCCAATAACTTAAACAACTTGCCAGGCCAGGATCATGCTTGCAATCCCAAGTTTAACAGTTCTGCCCAAAATAACAAGAGTCAAGGGACATTCCTCAAAACCGATGACCCAAAGAGAAGTGCATTGATGCAACAGGCAGAGTTACTAAGTTCACTAGCTCTTAAAGTTGATACAGAGAACATGGACCAAAGTCTTGAAAACGCATGGAAGGCTCTTCAAGAGTTTCTGAACCGAACCAAAGAATCAGATATTCCTGGACACAAGATTCGAGATTTACAGCTCAAAGATGTTGAAGATATGATTGAGGACTTGATGAACGGCAGTGAGAATGGCCAGGCTTGTTGGAGGCAAGTGGAACGTCATGAAGATTCTCCAGGAAGTTCTGGATACAGTACAGGATCAACTCTCCTGTGTCAGTCAGCTGGTGATAATTTGGATCACTCATTGCATGAGGATATTGGAACTGAAATAAAGTCTGAGCAATTTGGAGATGAAAAAGGAGTAGGTAGAGATGAGAAAGGGGTTCTTTCTACTGCAAATGTAGATCAAGATTTATTCCCATCTTGTGAGGAACAGATAAACAATGATGGCATTGTTTCTGCCTTGTCAGGTTCGGAGGAGTTCAGTTCACCTCTTCAAGTTACCCCTCTGTTTAGATCCTTAGCTGCTGGAATTCCCAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCTTAAGGAAAACACTCGGAATGGAATCTCCATCCATCAACCCAAGTGCCAAATCATTACAACCACCACCGTGCAAAAGAGCCCTACTGCCTAGTCTATAA 1422 0.4114 MQDMKQKQQGNEESKKKERHIVTWSQEEDDILREQIGIHGTENWAVIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKREKYAALAKENCTSYINSNNKRIILQHYNNMDTTSESGVPIGKMRRAHIPDDAEKIKFGDRSHLQNRTQINQQPRAPFAVLAQNSNNLNNLPGQDHACNPKFNSSAQNNKSQGTFLKTDDPKRSALMQQAELLSSLALKVDTENMDQSLENAWKALQEFLNRTKESDIPGHKIRDLQLKDVEDMIEDLMNGSENGQACWRQVERHEDSPGSSGYSTGSTLLCQSAGDNLDHSLHEDIGTEIKSEQFGDEKGVGRDEKGVLSTANVDQDLFPSCEEQINNDGIVSALSGSEEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLRKTLGMESPSINPSAKSLQPPPCKRALLPSL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01234 473 Pfam Myb-like DNA-binding domain 24 84 - -
Cca01g01234 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 67 IPR017930 -
Cca01g01234 473 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g01234 473 PANTHER TRANSCRIPTION FACTOR MYB88 7 470 - -
Cca01g01234 473 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Cca01g01234 473 Gene3D - 74 148 - -
Cca01g01234 473 CDD SANT 76 117 IPR001005 -
Cca01g01234 473 Gene3D - 11 72 - -
Cca01g01234 473 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Cca01g01234 473 ProSiteProfiles Myb-like domain profile. 24 67 IPR001005 -
Cca01g01234 473 SUPERFAMILY Homeodomain-like 20 114 IPR009057 -
Cca01g01234 473 CDD SANT 23 67 IPR001005 -
Cca01g01234 473 PANTHER MYB PROTEIN-RELATED 7 470 - -
Cca01g01234 473 SMART sant 72 120 IPR001005 -
Cca01g01234 473 SMART sant 20 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01234 Cca-Chr1 20822961 20827883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01234 62 473 MYB Transcription Factor Family AT1G14350 51.325 4.14e-129 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g01234 Myb_DNA-bind_6 8.5e-14 CL0123