Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01233 ATGGCCTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAAGATGACCATCAACCTCCACCTTCACTCAACTCAATTATAACTTCATGTGCACCTCAAGAGTACCATGGAGGAGCATCCTTTCTTGGCAAGAGATCTATGTCATTTTCAGGGATTGAACTTGGAGAAGAAGCCAATGCTGAGGAAGATTTATCTGATGATGGATCACAGGCAGGAGAGAAGAAAAGGAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGATTGCAGCCTAGACAGATTGCTATATGGTTCCAGAACAGAAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAGGACTATGATCTTCTCAAAAGACAATATGAAACTATCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTGCAGACTGAGGTTTGTAATTTTCTTCCTACTTGTTATAGTTTTTACTATTTCAATTGTGGTTTCATTCTTTTTAAAGCTTCTTATTATGTGAGAAGAGAACTCAGAAGAAAAGATAAAATTCTCAAACAAATATTTATGGAAAAAGAAAATTAA 633 0.3934 MAFFPANFMLQTPHQDDHQPPPSLNSIITSCAPQEYHGGASFLGKRSMSFSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYETIKADNDALQAQNQKLQTEVCNFLPTCYSFYYFNCGFILFKASYYVRRELRRKDKILKQIFMEKEN 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01233 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 165 IPR045224 GO:0003700
Cca01g01233 210 PRINTS Lambda-repressor HTH signature 110 126 IPR000047 GO:0003677
Cca01g01233 210 PRINTS Lambda-repressor HTH signature 101 110 IPR000047 GO:0003677
Cca01g01233 210 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Cca01g01233 210 CDD homeodomain 75 131 IPR001356 GO:0003677
Cca01g01233 210 Gene3D - 67 136 - -
Cca01g01233 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 1 165 - -
Cca01g01233 210 Coils Coil 122 163 - -
Cca01g01233 210 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Cca01g01233 210 Pfam Homeodomain 75 128 IPR001356 GO:0003677
Cca01g01233 210 SUPERFAMILY Homeodomain-like 68 132 IPR009057 -
Cca01g01233 210 SMART HOX_1 73 134 IPR001356 GO:0003677
Cca01g01233 210 MobiDBLite consensus disorder prediction 1 22 - -
Cca01g01233 210 Pfam Homeobox associated leucine zipper 130 164 IPR003106 GO:0006355|GO:0043565
Cca01g01233 210 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01233 Cca-Chr1 20707623 20710335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01233 1 164 Homeobox Transcription Factor Family AT1G69780 72.619 4.30e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca01g01233 Homeodomain 8.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01233 K09338 - gmx:100801479 319.316