Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01231 ATGGCGGGGAAGACTGACTCGGTGTCGATCCGCGTTCCGTACAAGAACCTTCGCCACGATTCCTCCGCTCCCGAAGTCGAACTCGTCGATGTCGACCACCGGAACTCGCCGCCTCCGCCGAATCACTCGCCGTCGCCGCCCAAGGCCAACGCCTCCCTCCTCAGACTCGTTCTCAGTTGCACCGTCGCCGCCGGCGTCCAATTCGGCTGGGCCTTGCAGCTCTCTCTTTTGACGCCATACATTCAGACGTTGGGAATAGGACATGCGTTTTCTTCCTTTATTTGGCTTTGTGGCCCCATTACAGGTCTTGTGGTTCAACCCTGCGTTGGAATTTGGAGTGATAAATGTACTTCAAGGTTTGGCAGGAGACGGCCGTTCATTTTGGCAGGATCTCTTCTGATATCTGTGGCTGTGATATTAATCGGATTTTCTGCAGACATTGGATATCTATTAGGTGATACACACGAGCATTGCAGAACTTTTAAAGGGACCCGAACAAGGGCTGCTGTTGTATTTATTCTTGGGTTCTGGATGCTGGACCTCGCAAACAACACAGTGCAGGGGCCAGCTCGGGCACTTTTGGCTGATCTGTCTGGTCCTGAACAACGCAATGTCTCAAATGCTGTATTTTGCTCATGGATGGCAGTTGGAAACATCCTAGGATATTCTTCTGGTGCTAGTGGAAAATGGAACAAATGGTTCCCTTTCTTGACAAGTAGAGCTTGCTGTGAAGCCTGTGGCAATCTTAAGGCAGCATTTCTTGTGGCTGTGGTGTTTCTGGCATTTTGCACACTTGTCACCCTATACTTTGCTAATGAGGTTCCACTTGCTACTGCAAGTCAACATCATGACACGTCAGATTCTGCTCCTTTATTGGATGAACAACAACAAAATGGTGTTGAATTTTCAAAATCAAAGCCTTTATCTGTTATTGATGAACCCAATGGTATGGGAAATGAGGATCACATTCAGAAAGAAGTAGACCTGAAGCATGAGAATTTCAAACCTGAGGAAGATCATTCTGAAAATTTAATGGATGGGCCTGGGGCAGTACTGGTAAACTTGTTGACAAGTTTAAGGCATTTGCCACCTGCTATGCATTCAGTCCTGATTGTAATGGCTCTCACTTGGTTGTCATGGTTTCCCTTCTTTCTGTTTGATACGGATTGGATGGGGAGAGAAGTTTATCATGGGGATCCAAAAGGGAACGCTTCTGAAGTTTATCTATATGATCAAGGTGTTAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTCCTTGGAATTAGCTCTTTCTTCATTGAACCAATGTGTAACTGGATGGGTCCAAAATTAGTATGGGCAGTGAGCAATTTTGTGGTCTTTGTTTGCATGGCTGGCACTGCTATAATTAGTCTAATTTCGGTTCGAGATTATACTGGAGGGATAGAACATGTAATAGGAGCAAGTGAAACAATCAAGATTGCTTCCTTGGTTGTGTTTGTTCTCCTTGGTTTCCCACTTGCAATTACCTATAGTGTTCCTTTTGCTGTCACAGCAGAGTTGACTGCTGATTCAGGTGGTGGCCAAGGATTAGCTATAGGAGTTCTAAATCTTGCAATTGTTGTTCCCCAGATGGTTATATCCCTTGGTTCTGGTCCTTGGGATGCTCTCTTTGGCGGTGGCAATATTCCTGCCTTTGTTTTGGCTTCTGTATGTGCTCTTGCTGGTGGTGTCATTGCAGCTCTCAAACTACCAAATCTGTCTAGCAGTTCATTCAAGTCAACGGGATTTCATGTTGGCTAG 1788 0.4569 MAGKTDSVSIRVPYKNLRHDSSAPEVELVDVDHRNSPPPPNHSPSPPKANASLLRLVLSCTVAAGVQFGWALQLSLLTPYIQTLGIGHAFSSFIWLCGPITGLVVQPCVGIWSDKCTSRFGRRRPFILAGSLLISVAVILIGFSADIGYLLGDTHEHCRTFKGTRTRAAVVFILGFWMLDLANNTVQGPARALLADLSGPEQRNVSNAVFCSWMAVGNILGYSSGASGKWNKWFPFLTSRACCEACGNLKAAFLVAVVFLAFCTLVTLYFANEVPLATASQHHDTSDSAPLLDEQQQNGVEFSKSKPLSVIDEPNGMGNEDHIQKEVDLKHENFKPEEDHSENLMDGPGAVLVNLLTSLRHLPPAMHSVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNASEVYLYDQGVREGAFGLLLNSVVLGISSFFIEPMCNWMGPKLVWAVSNFVVFVCMAGTAIISLISVRDYTGGIEHVIGASETIKIASLVVFVLLGFPLAITYSVPFAVTAELTADSGGGQGLAIGVLNLAIVVPQMVISLGSGPWDALFGGGNIPAFVLASVCALAGGVIAALKLPNLSSSSFKSTGFHVG 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01231 595 Pfam MFS/sugar transport protein 71 216 - -
Cca01g01231 595 Gene3D MFS general substrate transporter like domains 52 578 IPR036259 -
Cca01g01231 595 MobiDBLite consensus disorder prediction 1 47 - -
Cca01g01231 595 SUPERFAMILY MFS general substrate transporter 56 581 IPR036259 -
Cca01g01231 595 PANTHER SUCROSE TRANSPORT PROTEIN SUC3 36 595 - -
Cca01g01231 595 PANTHER SUGAR TRANSPORTER 36 595 - -
Cca01g01231 595 CDD MFS_SLC45_SUC 56 577 - -
Cca01g01231 595 MobiDBLite consensus disorder prediction 18 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01231 Cca-Chr1 20636404 20642081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01231 139 595 Sucrose Transporter Gene Family AT2G02860 70.435 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01231 K15378 - gmx:100803894 1068.91