Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01230 ATGTCTACAAGAAGATCTCGTTCCAGACAACAATCCGGTGTTCCCACTGAGATCACTGATGCTCAGATTACTGATCTCGTTTCCAAGTTGCAACAACTCATCCCTGAACTACGGGCAAGGCGTTCCGACAAGGTTTCAGCTTCCAAGGTCTTGCAAGAGACTTGCAACTACATCAAAAACTTGCACAGAGAGGTTGATGATCTAAGTGACCGGTTGTCACAACTTTTGGCAACCACAGACTCCAACAGTGCCCAAGCAGCCATTATTAGGAGCttacttatgtaa 285 0.4491 MSTRRSRSRQQSGVPTEITDAQITDLVSKLQQLIPELRARRSDKVSASKVLQETCNYIKNLHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLM 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01230 94 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 22 83 IPR036638 GO:0046983
Cca01g01230 94 CDD bHLH_AtPRE_like 18 78 - -
Cca01g01230 94 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 61 IPR011598 GO:0046983
Cca01g01230 94 PANTHER TRANSCRIPTION FACTOR PRE6 1 94 - -
Cca01g01230 94 Coils Coil 58 78 - -
Cca01g01230 94 Gene3D - 4 91 IPR036638 GO:0046983
Cca01g01230 94 Pfam Helix-loop-helix DNA-binding domain 22 61 IPR011598 GO:0046983
Cca01g01230 94 PANTHER TRANSCRIPTION FACTOR PRE 1 94 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01230 Cca-Chr1 20490392 20491648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01230 1 94 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 67.368 2.02e-34 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca01g01230 HLH 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01230 - - gmx:100791371 159.073