Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01225 ATGGCTGATCCTCAGAAAACTGGTGTTGTCGAGAGAGATATCGAGCAGGCAATTACATCTCTTAAGAAAGGCTCATATCTGCTGAAGTACGGGCGAAGAGGGAAGCCGAAGTTCTGCCCGTTTAGGCTTTCCAATGACGAGTCTCTACTCTTATGGTACTCTGGCAAGGAAGAGAAACAGATAAAGCTCAGCACAGTTTCAAGGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCACGGCCTGAAAAGGAATATCAATCATTTTCTCTTATATACAATGATAGGTCCTTGGATTTGATATGCAAGGACAAAGATGAAGCTGAAATCTGGTTTGTTGGTCTTAAGGCATTAATTACTCGAGTTAACAGTCGCAAGTGGAGATTTGAATCAAGAACTGATGACAGTCTGTATACTGAAAGTCCAATTTCTAGCACAAGAAGAACAGCCACTCCATCAATTACACCATTTTCTGACCCTGGTGTTGCTGGCACTGGCAGAGGTGCTTGTGATTTGCAAAATAGATGGGTAAAGGCTTTCTCTGAAATAATTTCTTACACTGCAGCTAGCAAGAGCTGCAGTCAAGCTGAATCAATTGCAAATTCCTCTTTATCCTCTGGGTCTGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCATATCGAGTTAGTTTATCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATGCTCTAGGTGATGTTTTTATTTGGGGAGAAGGTATTGGCAATGGAATTCTTGTTGGTGGTGTACATAGAGTTGGAGCCTTATCTAGTTCTGAGATGGATGCATTCCTTCCCAAGGTATTGGAATCAAAGTCAGTTCTAGATGTTCATAGTATTGGTTGTGGCTACAGACATGCTGTTCTAGTTACCAAGCAGGGAGAGATATTTAGTTGGGGGGAGGAGTCAGGAGGTAGGCTTGGCCATGGTGTAGAAATGGATGTTTTTCAGCCTAAGCACATTGACACTCTTAGTGGCATGAATATTGAGTTAGTAGCATGTGGAGAATATCATACTTGTGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTACTCACAATTCTGGCATGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCTAAGAAAGTAAGTGGTAACTTGGAGGGCTTACGTGTATCATATGTGTCTTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAGTTGTTCACATTTGGTGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCATAGTAGCACAAATGTTCCTCGGGAAGTAGAAACTTTGAAAGGTTTGAGAACAACCAGGGTTGCATGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGCAATAAATGAATCTGTGGAATCTTCTATACGCTCATCTAGTGGAAGACTGTATACCTGGGGTGATGGAGATAAAGGCCAACTTGGACATGAAGATAGGGAATCTAGATTGGTTCCCAAGTGTGTAATTGCATTGAGTAGTGAAAACATTTGTCGAGTGGCTTGTGGACACAGTCTTACGATTGCTTTGACAACGTCAGGACATGTATATACAATGGGAAGTACAGCTTATGGACAACTTGGCTGTCCTGCATCAGATGGGAAAGCCCCTAAACGTGTTCAAGATAAAATTGCTGACAGTTTTGTTGAAGATATTGCCTGCGGTTCATATCATGTTGCAGTCCTGACCTCCAAGGCCGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGCCATGGAGACAATGATCACAGGAATAAACCCACAATTGTTGAGTTTTTAAAAGATAAACAAGTGAAAAGCATTTTTTGTGGTTCAAACTTTACTGCTGTTGTATGTCTTCATAAATGGATACCAAGTGTTGATCATTCTACATGTTTTGGATGTCGTAATCCATTTAATTTTAGAAGAAAACGTCATAATTGTTACAATTGTGGACTTGTGTTTTGCAATTCATGCACCAGCAAGAAATCTATGAAAGCTTCCCTTGCTCCTAATTCCACCAAGCCGTATCGAGTTTGTGATGACTGTTATCTTAAACTTAAGAAGACTGCTGAATCAGTATCCTCGGTGCAAACAACTAGCTTGAGAAGTGTGAGTTTTCAAGACAATAGAGCAACTAAAATACAGGGAGCACTGTTAAGGCTTTCCTCTTTTGGTTCTATTCTTCAAACAGAAAGTAGTCAATCAAAGCTTCCAGATTCACAATATAGCCATCTTTTCCCAGCTTTGAATGGAAAATTACAGCCGAAGGGTTTTTCTCCCTCAAAATCATCAAATTCTCTTTCTGTGGATTCTAGGAAACACCGTTCAGTTTCTGAGCCTGCTACAAGATTATCTTGTCAATCAACATCTCCAGTTTCATCAAAGTCAAGTCCAAGACAATCTTATGAAGATATCAATGATGATTTAAAGCGCAAAAATGATATTTTAAGTCAAGAAGCTATAAGTTTGAGAACACAGATTGAAGATCTTACTCGTAAGTCAAAAAGTTTAGAGGCTGAACTTGAGAGAACATCAAAACAATTGAAGGAGGTGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAGTCATTGACTGCACAGTTGAAGGAAATGGTGGAAAGAGTACCAGAAGGACATAATGCTGACTCCAGTTCAGAGCTCTGTGCTGAAACCACTAATAGTATTCTAGATCATTCCTTAGATGAGATCCATATAAGAAACGCTGTCATTCCCAAAAATGAAGGCAGCAGCAATGTAGCAAATCAGATATTATCTAATGGTGCCAAAACACAAAGTGGGAAGGCAGAGTGGGTAGTGCAAGATGAACCAGGTGTGTACATAAGTTTGTGCTCCCAGCCAGGTGGTGGTAATGAGCTTAAGCGAGTTCGCTTCAGTCGAAAGCATTTCACAGAAGAACAAGCTGAAAAGTGGTGGGCCGAATATGGAACCAAAGTATTGGAGCGTAAATTCTTTTCCATTCTCCCTCTTCCAAAATTAACAAGGATCTTTTGTCCAAAATTGACAGAAAAGTTTATTGGCAAAAGCGAGAAAGATGGTGATGATTGCTCAAGTGCATCTTCATTGGAGCAAGTGGCAAAAGAACTATCCGAGAACGTGTACTCCAATACACCATTTTTCTTCTCCATGTTCCATGCCTTCCTAGAACTCCATGTTAACTTTGGCCTGAGGACGGAGGTGGAAGGTTCCATGGTTTTAGTTACATTCTCTGATTTTGAGGAAGCACCGAGTCAAGATTAA 3333 0.4116 MADPQKTGVVERDIEQAITSLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQIKLSTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFVGLKALITRVNSRKWRFESRTDDSLYTESPISSTRRTATPSITPFSDPGVAGTGRGACDLQNRWVKAFSEIISYTAASKSCSQAESIANSSLSSGSVDNSSNRNSASEAYRVSLSSAVSSSSQGSYHEDFDALGDVFIWGEGIGNGILVGGVHRVGALSSSEMDAFLPKVLESKSVLDVHSIGCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEMDVFQPKHIDTLSGMNIELVACGEYHTCAVTYSGDLYTWGDGTHNSGMLGHGNEVSHWIPKKVSGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDHSSTNVPREVETLKGLRTTRVACGVWHTAAVVEAINESVESSIRSSSGRLYTWGDGDKGQLGHEDRESRLVPKCVIALSSENICRVACGHSLTIALTTSGHVYTMGSTAYGQLGCPASDGKAPKRVQDKIADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTIVEFLKDKQVKSIFCGSNFTAVVCLHKWIPSVDHSTCFGCRNPFNFRRKRHNCYNCGLVFCNSCTSKKSMKASLAPNSTKPYRVCDDCYLKLKKTAESVSSVQTTSLRSVSFQDNRATKIQGALLRLSSFGSILQTESSQSKLPDSQYSHLFPALNGKLQPKGFSPSKSSNSLSVDSRKHRSVSEPATRLSCQSTSPVSSKSSPRQSYEDINDDLKRKNDILSQEAISLRTQIEDLTRKSKSLEAELERTSKQLKEVTAVAADEAGKCKSAKEVIKSLTAQLKEMVERVPEGHNADSSSELCAETTNSILDHSLDEIHIRNAVIPKNEGSSNVANQILSNGAKTQSGKAEWVVQDEPGVYISLCSQPGGGNELKRVRFSRKHFTEEQAEKWWAEYGTKVLERKFFSILPLPKLTRIFCPKLTEKFIGKSEKDGDDCSSASSLEQVAKELSENVYSNTPFFFSMFHAFLELHVNFGLRTEVEGSMVLVTFSDFEEAPSQD 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01225 1110 Gene3D - 475 644 IPR009091 -
Cca01g01225 1110 SMART fyve_4 634 705 IPR000306 GO:0046872
Cca01g01225 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 533 582 IPR000408 -
Cca01g01225 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 361 412 IPR000408 -
Cca01g01225 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 587 634 IPR000408 -
Cca01g01225 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 417 465 IPR000408 -
Cca01g01225 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 481 530 IPR000408 -
Cca01g01225 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 310 358 IPR000408 -
Cca01g01225 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 534 585 IPR000408 -
Cca01g01225 1110 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1013 - -
Cca01g01225 1110 CDD PH_PLC_plant-like 12 122 - -
Cca01g01225 1110 Pfam FYVE zinc finger 638 704 IPR000306 GO:0046872
Cca01g01225 1110 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 455 465 IPR000408 -
Cca01g01225 1110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 715 IPR013083 -
Cca01g01225 1110 SMART PH_update 21 124 IPR001849 -
Cca01g01225 1110 MobiDBLite consensus disorder prediction 797 817 - -
Cca01g01225 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 586 637 IPR000408 -
Cca01g01225 1110 MobiDBLite consensus disorder prediction 140 160 - -
Cca01g01225 1110 Gene3D - 12 129 IPR011993 -
Cca01g01225 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 309 IPR000408 -
Cca01g01225 1110 Pfam Transcription factor regulating root and shoot growth via Pin3 959 1012 IPR013591 -
Cca01g01225 1110 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 296 306 IPR000408 -
Cca01g01225 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 362 416 IPR000408 -
Cca01g01225 1110 SUPERFAMILY RCC1/BLIP-II 247 639 IPR009091 -
Cca01g01225 1110 Gene3D - 177 372 IPR009091 -
Cca01g01225 1110 Gene3D - 373 473 IPR009091 -
Cca01g01225 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 482 533 IPR000408 -
Cca01g01225 1110 Pfam Transcription factor BRX N-terminal domain 874 902 IPR027988 -
Cca01g01225 1110 MobiDBLite consensus disorder prediction 770 825 - -
Cca01g01225 1110 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1013 - -
Cca01g01225 1110 Coils Coil 879 899 - -
Cca01g01225 1110 SUPERFAMILY FYVE/PHD zinc finger 638 712 IPR011011 -
Cca01g01225 1110 ProSiteProfiles BRX domain profile. 960 1015 IPR013591 -
Cca01g01225 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 310 361 IPR000408 -
Cca01g01225 1110 Coils Coil 816 871 - -
Cca01g01225 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 417 468 IPR000408 -
Cca01g01225 1110 PRINTS Chromosome condensation regulator RCC1 signature 419 433 IPR000408 -
Cca01g01225 1110 PRINTS Chromosome condensation regulator RCC1 signature 312 328 IPR000408 -
Cca01g01225 1110 PRINTS Chromosome condensation regulator RCC1 signature 403 419 IPR000408 -
Cca01g01225 1110 PRINTS Chromosome condensation regulator RCC1 signature 523 541 IPR000408 -
Cca01g01225 1110 PRINTS Chromosome condensation regulator RCC1 signature 581 602 IPR000408 -
Cca01g01225 1110 PRINTS Chromosome condensation regulator RCC1 signature 362 378 IPR000408 -
Cca01g01225 1110 SUPERFAMILY PH domain-like 13 121 - -
Cca01g01225 1110 MobiDBLite consensus disorder prediction 140 162 - -
Cca01g01225 1110 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 642 704 IPR017455 -
Cca01g01225 1110 Pfam Pleckstrin homology domain 15 121 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01225 Cca-Chr1 19961532 19979628 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01225 958 1012 Major Intrinsic Protein MIP AT1G31880 52.727 4.29e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01225 - - pvu:PHAVU_003G066900g 1506.12