Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01223 ATGGAAACCCTTGTGAAAACGTTCCTCACTCTCATATTATTATCTTCCATTTTCTCAATAGCCTCATCAAGAAGAGGACCAGCTTCATCCAGCAACATAGATTGGTGGTGCAACCTAACCCCACACCCTGTGCCATGCAAACACTACATCACAACTCACATGAAGAGCCACCATTTCCCAATCAAACACAAAACTAACTTCCGGGGCATGCTCCTTCAAGTCTCCCTAAACCAATCCATCACCATGCAAAAAGAAGCACGTGAATCATACCAAAACAACCACATGGCAACAAAGAACCACAGAACCGTGCATGGTGATTGCTTGAAGCTCTATGAGAAAACCATCTTCCACCTCAACCGCACCCTCGAATGCTTGCATCACGTGAAGCAAAACTGTTCACCGGATGATGCACAAACTTGGCTCAGCACTGCTCTCACAAACATTCAAACGTGTCAAACAGGAACCGATGAACTCGGTGTTCGAGATTTCAAGGCTCCTAGTGTGACCAACAACGTTACTGAGATGATAAGGAACTGTTTGGCCATCAACATGGACTTCATGAAACGTCATCACACGGAAGAGAAAACGGAAGAGGAGTTTCCTGGTTGGTTTTCAACGCGTGAGAGGAAACTGTTGCAGTCTTCATCGATAAAGGCACATGCTGTGGTGGCAAAAGATGGTTCGGGGGATTTCAGGACTGTGCAAGAAGCTCTCGATGCTGCGGCAAAGAGGAAAGTGAAGGGGAGGTTTGTGATACACGTGAAGAAAGGGGTGTATAGAGAGAATATTGAGGTTGCTGTGCACAATGATAACATCATGTTGGTTGGTGATGGATTGAGAAATACGATTATCACCAGTGGTAGAAGTGTTCAAGATGGTTATACAACTTATAGTTCTGCAACAGCTGGCATCGATGGCCTCCACTTCATTGCACGCGACATCACCTTCCAAAACACCGCCGGTCCTCACAAGGGTCAAGCGGTGGCGCTCCGGTCGGCCTCCGATCTCTCGGTGTTCTACCGGTGCGCCATCATTGGCCACCAAGACACCCTCATGGCCCATGCACAACGCCAATTCTACCGTCAATGCTTCATCTACGGCACCGTTGACTTCATCTTTGGCAACGCCGCAGTGGTGTTCCAAAACTGTTACATTTTCGCAAGAAGGCCCTTAGAGGGCCAGGCCAACATGATCACGGCCCAAGGACGAGGTGACCCATTCCAAAACACCGGAATCTCAATCCACAACTCTCAAATACGGGCCGCACCGGACCTCAGGCCCGTTGCTGACAAATACAACACTTTCTTGGGCCGGCCCTGGCAGCAATACTCAAGAGTTGTGGTCATGAAAACGTTCATGGACACCTTGGTGAACCCATTGGGTTGGTCTCCGTGGGATGATTCTGATTTTGCTCAAGACACGCTTTATTTTGGAGAGTACCAAAACTATGGGCCTGGAGCTTCCACAACTAACAGAGTGACATGGCCCGGTTTTCATGTGATTAAAAGCCCATCTGAAGCGTCTCAGTTTACAGTCTCGCGCCTCCTCGCTGGCCCAACATGGTTGGGCTCTACAACCGTGCCATTTACCTCTGGTCTTTGA 1602 0.4869 METLVKTFLTLILLSSIFSIASSRRGPASSSNIDWWCNLTPHPVPCKHYITTHMKSHHFPIKHKTNFRGMLLQVSLNQSITMQKEARESYQNNHMATKNHRTVHGDCLKLYEKTIFHLNRTLECLHHVKQNCSPDDAQTWLSTALTNIQTCQTGTDELGVRDFKAPSVTNNVTEMIRNCLAINMDFMKRHHTEEKTEEEFPGWFSTRERKLLQSSSIKAHAVVAKDGSGDFRTVQEALDAAAKRKVKGRFVIHVKKGVYRENIEVAVHNDNIMLVGDGLRNTIITSGRSVQDGYTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAIIGHQDTLMAHAQRQFYRQCFIYGTVDFIFGNAAVVFQNCYIFARRPLEGQANMITAQGRGDPFQNTGISIHNSQIRAAPDLRPVADKYNTFLGRPWQQYSRVVVMKTFMDTLVNPLGWSPWDDSDFAQDTLYFGEYQNYGPGASTTNRVTWPGFHVIKSPSEASQFTVSRLLAGPTWLGSTTVPFTSGL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01223 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 186 IPR035513 -
Cca01g01223 533 PANTHER PECTINESTERASE 1 532 - -
Cca01g01223 533 Pfam Pectinesterase 221 518 IPR000070 GO:0030599|GO:0042545
Cca01g01223 533 SUPERFAMILY Pectin lyase-like 217 532 IPR011050 -
Cca01g01223 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 183 IPR035513 -
Cca01g01223 533 PANTHER PECTINESTERASE 1 532 - -
Cca01g01223 533 SMART PMEI_2 28 182 IPR006501 GO:0004857
Cca01g01223 533 Pfam Plant invertase/pectin methylesterase inhibitor 32 182 IPR006501 GO:0004857
Cca01g01223 533 CDD PMEI-like_3 35 188 - -
Cca01g01223 533 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Cca01g01223 533 Gene3D - 214 533 IPR012334 -
Cca01g01223 533 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 183 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01223 Cca-Chr1 19935705 19938920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01223 28 533 Carbohydrate Esterase AT5G51500 55.469 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01223 K01051 - gmx:100806133 907.516