Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01220 ATGATGGAAGACGCCATTTGCAAGCCCAGTGGCCCACTACAGCTCTTGCAGAAAAAAGACGAGCCTGACGCGCCGCCCAAGAAGCGCCCGGCGACCAAGGACCGCCACACCAAGGTGGAGGGGCGGGGGCGGCGGATCCGGATGCCGGCGGCCTGCGCGGCCAGGGTCTTCCAGCTGACGCGCGAGCTCGGCCACAGGTCCGACGGGGAAACCATCGAGTGGCTGCTCCGGCAGGCGGAGCCCGCGGTGGTCGCCGCCACGGGCACCGGCACCATCCCGGCGAACTTCACCTCGCTCAACCTCTCCGCCCGCAGCTCCGCCTCCAGCCTCTCCTCCCCCTCGCTCTTCTTCAACCGCCATGCCCTAGAATATTCTAGAACATTCAcaaccacaaccacaacctcaacctcgacctccacGAACGCGTTTTTCAACGCTAATTATAACAACTTTCTAAAGAGAAAGCACGAGATGATTTCGCACGTGCCAAGCACGGACTCCGTTCCCGGCGTCGACGTCACTGACGCTGATTCCGTTTGGGCTATGAATCCCTCTCTCTCAGTTATGCCATCTTTTATGAACTTCGCTTCTCTGTTGACCGGTCAACACGCGAGTCAAACCGATTTCGCTTTTCTTCCCAATGCCACCAACCTTGGTGCCTTTTCCGACCCACAACATCGTCATTACGGAGATAAATGA 699 0.5608 MMEDAICKPSGPLQLLQKKDEPDAPPKKRPATKDRHTKVEGRGRRIRMPAACAARVFQLTRELGHRSDGETIEWLLRQAEPAVVAATGTGTIPANFTSLNLSARSSASSLSSPSLFFNRHALEYSRTFTTTTTTSTSTSTNAFFNANYNNFLKRKHEMISHVPSTDSVPGVDVTDADSVWAMNPSLSVMPSFMNFASLLTGQHASQTDFAFLPNATNLGAFSDPQHRHYGDK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01220 232 Pfam TCP family transcription factor 31 139 IPR017887 -
Cca01g01220 232 ProSiteProfiles TCP domain profile. 32 86 IPR017887 -
Cca01g01220 232 MobiDBLite consensus disorder prediction 20 41 - -
Cca01g01220 232 MobiDBLite consensus disorder prediction 1 41 - -
Cca01g01220 232 PANTHER TRANSCRIPTION FACTOR TCP23 17 157 - -
Cca01g01220 232 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 157 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01220 Cca-Chr1 19892934 19894177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01220 4 101 TCP Transcription Factor Family AT1G69690 67.241 1.89e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca01g01220 TCP 7.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01220 - - gmx:102664835 210.305