Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01198 ATGGAAGAGAGAAATGATGGTGAGAAACTAGATGAGGTTATGCTACCAGGTTTTAGGTTTCATCCAACAGACGAGGAGCTTGTTGGATTTTACCTAAAGAGAAAGATTCAGCAGCGGCCTCTCTCTATTGAGCTCATCAAGCAGCTTGATATCTACAAATATGATCCTTGGGATCTTCCAAAGTTGGCTTCCACCGGGGAGAAAGAGTGGTATTTCTACTGCCCCAGAGACAGAAAGTACAGGAACAGTGCAAGGCCTAATAGGGTAACCGGAGCTGGATTCTGGAAAGCTACTGGGACTGATCGCCCTATCTATTCCTCAGAGGGTTCGAAGTGTATTGGCCTCAAGAAATCCCTTGTCTTCTACAAAGGTAGAGCTGCCAAAGGGATCAAAACTGATTGGATGATGCATGAGTTTAGACTGCCTTCTCTAACTCCCTCATCCTCCTCCCCCAAGAAGTACATGGACAAGAACATACCTGCTAACGAATCCTGGGCAATATGCAGGATCTTCAAGAAAACTAATGCTACAGCTCAAAGAGCTCTCTCTCACTCTTGGGTCTCTCCCTTGCCTGAAACTACCACTTCTGACCATATGCTAACCACTGATAGAAACAGCAACCAATTTTTTCCATCAAACATGCCATTGGCAAAGAAAACTAGCTTAGCCAGCCAGTTTTGTACTTTTAATCACAATGACACACAGCACTTAACTACTAGTAGTAGCACTCCTTGTCCTTTAGATGTTGTTGCCTCATATAACAAACCAATTATTAATCCGTTGCTTTACAAACCCTTAGACCGGTTACCCTTTTCAAATGGAGACCTTAGCACTGGCTCAATATTCTCCTCTCCTCTTGAAACATCAACAACCAGTGCTAAATCTTCAATGGAATATTTTTCTTCCTTGCTATCATCTTCTGTGCATGGAGAGTTTAGTAAGACCTCTGAGGGAACAACCACAAACTTTGGTGGGTTACAAGAGCATCATAGTAATGGCTACCACGTACCAATACTACGTGACATGCAAGGGACCATAGGCAACCACGACAACAATGTGTTGGTAAAGATTCCTAATAATGTGAATGTGCCTCGTGTTGATGACCAACAATTGGAAACAGGAAGATCCATTGGGTTTCCATTCGCTATGCCGTTCAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCTCTTTGTCCTTGTGA 1215 0.4321 MEERNDGEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTPSSSSPKKYMDKNIPANESWAICRIFKKTNATAQRALSHSWVSPLPETTTSDHMLTTDRNSNQFFPSNMPLAKKTSLASQFCTFNHNDTQHLTTSSSTPCPLDVVASYNKPIINPLLYKPLDRLPFSNGDLSTGSIFSSPLETSTTSAKSSMEYFSSLLSSSVHGEFSKTSEGTTTNFGGLQEHHSNGYHVPILRDMQGTIGNHDNNVLVKIPNNVNVPRVDDQQLETGRSIGFPFAMPFNIGDAWKSNLLWDTSSLSL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01198 404 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Cca01g01198 404 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 402 - -
Cca01g01198 404 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Cca01g01198 404 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Cca01g01198 404 PANTHER PROTEIN FEZ ISOFORM X1 1 402 - -
Cca01g01198 404 SUPERFAMILY NAC domain 13 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01198 Cca-Chr1 19250955 19252915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01198 2 261 NAC Transcription Factor Family AT1G26870 62.731 4.53e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca01g01198 NAM 6.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01198 - - vun:114179488 657.521