Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01197 ATGGGTACCAGAAACGTGTTTATGCTTAAGACACACATTGATTCAATCAATTTGTCTTCTGCTAATGGTTTTGTTTATGAAAACGTGATTTGGGCCTTGGCTTCTCTTTGGGTTTTTTTCTGCAACTATGTGTTGTATTCCTTGGGGTTGGTACTCAAATACATCTTCAGATTTCGTGTGGAAGATAGAAAAAGGGAGCACCTTGTTCCACATGACTTGTTTGATCATACCAAGAGAAATCATGTTGAAGATTCTAAGGTTGATGGGTTGGCAGAAGAGTTGGCCAATTTGCTATTTCCCATCTTTGAGAATTTTCATGTAGCAATTGAAGAGAGAGGAGAATCAGAGTGCCCTGTTTTATGGGGGATAGACTCTGATATACATAGTCATCAAGATGCTAAGAAATTAGAAGCAGAAACAGAGTTCTCTGTTTTAAAGGAGAAAGCCAATTATATGCACGAAGGTGCTAAGAAAATAGATGGAGAAACAGAGCACTCTGATTTAAAGGAGAAAGACTATGTTATACATGAAGATGGTAAGAGAATAGAAGGAGAAAGAGAGGAGTCTGTTTCCATGGAGACTGTTTCATGTGTTCATGAAGATTTTAATAAAATGGACCAAAATGAAAAAGATAGCTCTGTTTCCATGGAGGATGATTCCAATTTTCCAAAAGTTAATAGGAAGAATGTTGAAGAAGAACAAATAGAAGAGCCTTTTTGCACAGTACCAGATACTATCTCTGCTGAAGCCAGTGATTTGGTAGAAGAAGAAGAACCAAGGATCATGACCTTTACTTTCCAACGAAATTATACAGCTGTAAATGTTTCTGATAACATAATTTCCAGCACTAAAAATAATGCCAAAATTGAATTTTCAGAGAACAATTTGAAGAAAGGCCTTGTTGCTCAAGAAGAGAAAGAGCACTCTGTTCAAGAACAGAGGAACATCTCATCCAATTCCAATTCTGGTCAAATCCTTCAAATTAATGCGTTTGGTGGAAGTGATTCATCAGATGATGATGCTCTAAATGATAACACACAACAATCTGATTTTGGGTCAGAATCATGCTCCAGCAAAATTGATGATTTGGTAGCACATCAAATTCTGAGTAACAACCATTCCCGTGAAGAATTTGATTCTAAAAGCCTTAAGGGGATTAAGGAGGAAAGAGTTAAAGATAGAGAGGAAACTCAACTTTCATGTGATAGTGAAGCCTCACACAGTCCCAATTTTCATCTTCATTTGGAAGAAGCAAATAGGGGTAGCATGGAGAAAACTAAAGAATTCATGTGGGAAGATAACTCGGATGAATCAGATTTTGATGAAgaagaggaagaggaagaggaagaggatgaggaagaggaTGATGATGATTGGGAGCATGATGAGGTAGTGCAACAATTGAGATTGGAACTTAAAAATGCAAGACAAGGAGGACTTGCCACTATTTTAGAAGAGGAAGAAGATGAGGAAATTGAGTCTCCAAAAGTTGTTGAGGATCTTATGCCACTGAAGATCGAAGAGAAGGTACAATTCAAGGATCACATTATTGAAATTCAAAAGGTTTATAGGTGCTACGCAGAGAAAATTCGGAAACTGGATATTATTAATTACCAGACCATGCATGCAATAGGGCTTCTTCAACTACAAGACCCTCTAAAATTAATGTTAATTCCAAAATCAACCGTCCAAAGTGCGAAGCCTCTATTATCTCAGAATTTGTGGCCACGCAAAGCACTAAAGCAGATATCTGATCCAATTGTGAAGTTTATTGAAGAACTGCATGGGGATTTGGAATTGGTGTACGTTGGACAGGTTTGCCTCTCGTGGGAAATCCTGTGTTGGCAGCACAACAAAGTTGAAGAGTTGAAACAATATGATTCACAATGGCCTCGTAGCTATAATATTGTGGCCGGTGAGTTTCAACTTTTTCAAGTCCTCATGCAACGGTTTTTGGAGGATGAACCCTTTCAAGGCCCCAGGATTCAGAATTACGTCAAGAACCGCTGTCTTATTCGCAAATTGCTTCAAGTTCCACCTATTAAAGATGATAATACGAAGGACAAGAAAATAATTAAGTTGGGTGAAGAGTATGCAATTGATGGTGAAAGGTTGGCACATATAATGAAGGAGTCCATGCGGGTGTTCTGGGAATTTGTCAGAGCAGATAAAGATTATGGGAATGCAAACTCTAAAGTCTTGCATCAAACTGGAATTGATGTGAAGGACCCAGCAATTTCAGATCTTCTTGGGAATGTTAGAACCCAATTACACAAGAAGGAGAGAAAGCTGAAGGACATAGTGAGGAGTGGGAATTGCATAGTGAGGAAGTTCCAAAAGCACCATGAGGAACAAATTCAACTTGATCAAGAACAGTTGCTTGCTCAAGTGGGATTAAGATTGGTCTCAAGGGTGTTACACATGAAAAATTTGAGAAAAGATCGGGCAAAAGGAACTCGCCATGAGATTCAACTTTGTAAACTATTAAGCATCGCTGAAGCACTCTGGACGCAGGCATTTATGATGAAGCAGCGACTGTGTTACTCTTCTTCCACCTGTGAATGGACTTATGATGTGTTCCTCAGTTTTAGAGGCGAAGATACTCGAAGTGGCTTCACTGGAAACCTTTATAGATCTCTTTGTGACAGGGGAATCCACACATTCATAGATGATGTGGAGCTTAGCAGAGGGGAAATGATTACACCAGCCCTTTTCAAGGCAATTGAGCAGTCTAGAATTGCCATTGTTGTTTTCTCTGAAAATTATGCTTCCTCGGCTTATTGTCTTGAAGAACTTGTTATAATTCTTGAGTGCATAATGAAAAAGGGTCGATTGGTTTGGCCAGTTTTTTATGGAGTGAGTCCTTCTTATGTGCGGAATCAGGAAGGTTCTTATGGGGAAGCATTGGCTAAGCTTGGAGAAAGATTCAAGAATGACGAGGAGAGGCTGCGGAAATGGAAGCTAGCTCTAAAAGAAGCGGCTAATTTGTCTGGTTTTCATTTCATGTTCAAACATGGGTACGAATATAAATTTATTCAGACAATTGTTGAAGAGGTGTCAAGAAAGATAAATCGTAGCCCTTTACATGTGGCTAATTATCCAATTGGATTGGAATCTAGAGTGCAAGAGGTGAAGTCACTTTTGGATGTGGGATCTAATCAAGGAGTAAGCATGGTTGGAATTTATGGAATCGGGGGAATAGGTAAAACCACAATCACATGTGCATTGTATAATTGCATTGCTGATCAATTTGAAGGTCAGTGTTTTCTTGCTGATATTAGAGAAAATTCAATGAAGTATGGTTTAGTACAACTTCAGGAGACAATACTTTCTGAAATGGTTGGGGAGAAGAGTATCAAGTTGGGCAGTATTAATAGGGGAATGGCAGTATTGAAAAGCAAGCTTCAACGGAAGAAAGTTCTTTTGATCCTTGATGATGTTGATAAAATGGAGCAATTTAATGCACTTGCTGGTGATCTTTCTTGGTTTGGTTATGGCAGCAAAATCATTGTCACGACAAGGAATAAACATTTGCTACACGTACGTGGTGTTGAAAGAACATATGAGGCAAAAGGATTAGATCATAAAGAAGCTCTTGAGCTGTTTAGTTGGCATGCTTTTAAAAGCAATGAGGTTGGTCCAAGTTACATGGATGTCTCTAAGCGGGCAATACTTTATTCCAATGGCCTTCCTTTGGCTTTGGAAATAATAGGTTCTAACTTATGTGGTAAAACAATGTCTGAATGGATAGCAGCATTAGATACTTATGAAAGAATTCCAGATGAAGATATTCAGGAAAAACTTAAAGTAAGCTATGATGGTTTGAAGAGAAATGAGAAAGAAGTTTTCCTTGACATAGCTTGTTTCTTTAGAGGTTACATTTTGAAAGATGTCATAAGTTTATTGCTCCAAGGTCGTGGTTTCTCACCAGAGTATGTTATTCGAGTGTTGATTGATAGATCTCTCATAAAGATCGATCAATGTGGTTTTGTGAGAATGCATAACTTGGTAGAGGACATGGGCAGAGAAATTGTTCGGCAGGAATCACCATCAGAACCTGGGAAACGCAGTAGATTATGGCTTTATGAAGATATTGTTGATGTCTTGGAAAATGACAAGGGAACCGAAACAATTGAAGTAATCATGCTACATTTGCCAAAGAGTAAGGATGTTCGATGGAATGGAAGTGAGCTCAAGAAGATGACAAACCTAAAGATACTAACTATTGAAAATGCTTACTTTTCTAGAGGCCCTGAACATCTCCCAAATAGTTTGAGAGTACTAAAATGGTGGGGATATCCTTCACAGTCTCTGCCACCTGAATTTGATCCAAAGAGACTTGTTATGGTAGATTTGTCTATGAGTTGCAATTTCTTGGGCAAACAACTCGAACACATGAAGTTCGAGTCTTTGAGTGAAATGGTTTTAAGAGGTTGCAGATTCATGAAAAAGGTACCTGACATGTCTGGAGCCCAAAATTTAATGAAGCTTTGTCTTGATCATTGTAAGAATTTAGTAGAGGTTCATGATTCCGTTGGGCTTCTTGATAAACTTACACGGTTCACTGCTATTGGATGCACCAATCTAAGGTTTCTTCCTCACAACTTCAAGCTAACATCACTTGAACATCTGTCTCTCAGAAAATGCTCAAGCCTCCACTATTTGCCAAATATATTAGAAGACATGGAACATATAAAAAATCTTGATCTGTGTGGTACTGCTATCGAAGAATTACCATTTTCGTTTAGGAAACTCACTGGACTTAAATATTTAGTGCTGGACAAGTGCAAGAAGCTTTATCAGATCCCAATAAGTATTTTGATGTTACCAAAACTTGAGAGATTGACAGCTGTAAAATGTGGACGGCATGTAAATTTAATCCTTGGTAAAAATGAATTGGCTTCATCCAAGCCTTTGATGAAAGATGTTAGATTAAGCTACAATGATTTGACACCTGTCAGCCACTCCAATGTTGAATTCTTAGACCTAACTGCCAGTGCGTTCAAAGTCCTTCCTGAATGCATTAGCCAGTGTCGCTTTCTAAAGTATCTAGTTATGGACAATTGCAAGAAGCTTCAAGAAATCAGAGGGGTTCCTCCAAAGATAAAATATCTCTCGGCAATAAACTGTACATCACTGAATCACATGTCTCAAAGCATGTTATTGAATCAGAGATTACATGAGGGTGGGGGCACAGATTTTTCCCTTCCAGGAACAAGGATACCAGAATGGTTCGACCATTGTGTTGTGGGACCATCCCTGTCTTTCTGGTTTCGTCACAAATTTCCAAAGATGGCTCTAGCTGTTGTTGGAGTTTTGGACCAACAGGGCAGTTTTCCCACTTCAAGATTCCACTTGGTCATCAATTCTATTCAAAAGCTGCATTGCAATTTCACTGTGCAATCAAAACTAATCACATATCATATATTTTTGTCCGATGTACAACTCAAATCCTACAATGGTGAATTGGAAAGTGTGTATGGGGATGATGGGTGGAATCATGTTGAGATTTCATACGTAGGACCAATGGTCTTTCCACATTCATGCAAATCCAAGAAAGGAATCATTAAATGGATGGGGGTTCATGTCTACAAGAAAAAAACAACCGTGGAGGATGTCCGGTTCACAAATCCTAGGTCTCCAAAGAGAGCATATAGTGAAGTTTCCAAGTCTGGTTTGAATGGAAATTTTCAACCGTTGCCCAAAAGGAGCCGTTTATCACAAGGTATGGGAATTTGGGAGGCATCACATATGAAGCAGCATGAAGGTAATAGTGGTTATCATGGTGTATCACAGAGACTATGGTCGGCAATTTGCAGCATTGCTGCTCCTCTACATGTTAAAGTCCTAATGTGGAATAGTTGCCAAGATGCTTTGCCAACTTGTGAATATCTTTTCAGGAGGAAGCTTGTAGATAGCCCCCTCTGTCCCATTTGTGGAACTGTACCTGAAACCATTGAACATGTGTTCCTGTTTTGTCCATGGACACAACCCCTTTGGTTTGGAAGTGATTTCCAGTGGTGCATTGATGTCAATACAGTTCAAAGCTTTCAACTTTGGCTTTGCCAGAAACTCGTAGAGATTAATAGGGTATATCTCGAAAATGCCAGCCAAGCATTTGCTCTAGTGGGAAGTATTTGTTGGGCAATTTGGAAGGGAAGGAATGAATTTGTCCATGAAGGCAAACCTGTTAATCCGTTGATTTTAAGGAAGGAGAAATTTTAA 6225 0.3867 MGTRNVFMLKTHIDSINLSSANGFVYENVIWALASLWVFFCNYVLYSLGLVLKYIFRFRVEDRKREHLVPHDLFDHTKRNHVEDSKVDGLAEELANLLFPIFENFHVAIEERGESECPVLWGIDSDIHSHQDAKKLEAETEFSVLKEKANYMHEGAKKIDGETEHSDLKEKDYVIHEDGKRIEGEREESVSMETVSCVHEDFNKMDQNEKDSSVSMEDDSNFPKVNRKNVEEEQIEEPFCTVPDTISAEASDLVEEEEPRIMTFTFQRNYTAVNVSDNIISSTKNNAKIEFSENNLKKGLVAQEEKEHSVQEQRNISSNSNSGQILQINAFGGSDSSDDDALNDNTQQSDFGSESCSSKIDDLVAHQILSNNHSREEFDSKSLKGIKEERVKDREETQLSCDSEASHSPNFHLHLEEANRGSMEKTKEFMWEDNSDESDFDEEEEEEEEEDEEEDDDDWEHDEVVQQLRLELKNARQGGLATILEEEEDEEIESPKVVEDLMPLKIEEKVQFKDHIIEIQKVYRCYAEKIRKLDIINYQTMHAIGLLQLQDPLKLMLIPKSTVQSAKPLLSQNLWPRKALKQISDPIVKFIEELHGDLELVYVGQVCLSWEILCWQHNKVEELKQYDSQWPRSYNIVAGEFQLFQVLMQRFLEDEPFQGPRIQNYVKNRCLIRKLLQVPPIKDDNTKDKKIIKLGEEYAIDGERLAHIMKESMRVFWEFVRADKDYGNANSKVLHQTGIDVKDPAISDLLGNVRTQLHKKERKLKDIVRSGNCIVRKFQKHHEEQIQLDQEQLLAQVGLRLVSRVLHMKNLRKDRAKGTRHEIQLCKLLSIAEALWTQAFMMKQRLCYSSSTCEWTYDVFLSFRGEDTRSGFTGNLYRSLCDRGIHTFIDDVELSRGEMITPALFKAIEQSRIAIVVFSENYASSAYCLEELVIILECIMKKGRLVWPVFYGVSPSYVRNQEGSYGEALAKLGERFKNDEERLRKWKLALKEAANLSGFHFMFKHGYEYKFIQTIVEEVSRKINRSPLHVANYPIGLESRVQEVKSLLDVGSNQGVSMVGIYGIGGIGKTTITCALYNCIADQFEGQCFLADIRENSMKYGLVQLQETILSEMVGEKSIKLGSINRGMAVLKSKLQRKKVLLILDDVDKMEQFNALAGDLSWFGYGSKIIVTTRNKHLLHVRGVERTYEAKGLDHKEALELFSWHAFKSNEVGPSYMDVSKRAILYSNGLPLALEIIGSNLCGKTMSEWIAALDTYERIPDEDIQEKLKVSYDGLKRNEKEVFLDIACFFRGYILKDVISLLLQGRGFSPEYVIRVLIDRSLIKIDQCGFVRMHNLVEDMGREIVRQESPSEPGKRSRLWLYEDIVDVLENDKGTETIEVIMLHLPKSKDVRWNGSELKKMTNLKILTIENAYFSRGPEHLPNSLRVLKWWGYPSQSLPPEFDPKRLVMVDLSMSCNFLGKQLEHMKFESLSEMVLRGCRFMKKVPDMSGAQNLMKLCLDHCKNLVEVHDSVGLLDKLTRFTAIGCTNLRFLPHNFKLTSLEHLSLRKCSSLHYLPNILEDMEHIKNLDLCGTAIEELPFSFRKLTGLKYLVLDKCKKLYQIPISILMLPKLERLTAVKCGRHVNLILGKNELASSKPLMKDVRLSYNDLTPVSHSNVEFLDLTASAFKVLPECISQCRFLKYLVMDNCKKLQEIRGVPPKIKYLSAINCTSLNHMSQSMLLNQRLHEGGGTDFSLPGTRIPEWFDHCVVGPSLSFWFRHKFPKMALAVVGVLDQQGSFPTSRFHLVINSIQKLHCNFTVQSKLITYHIFLSDVQLKSYNGELESVYGDDGWNHVEISYVGPMVFPHSCKSKKGIIKWMGVHVYKKKTTVEDVRFTNPRSPKRAYSEVSKSGLNGNFQPLPKRSRLSQGMGIWEASHMKQHEGNSGYHGVSQRLWSAICSIAAPLHVKVLMWNSCQDALPTCEYLFRRKLVDSPLCPICGTVPETIEHVFLFCPWTQPLWFGSDFQWCIDVNTVQSFQLWLCQKLVEINRVYLENASQAFALVGSICWAIWKGRNEFVHEGKPVNPLILRKEKF 2074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01197 2074 MobiDBLite consensus disorder prediction 389 412 - -
Cca01g01197 2074 MobiDBLite consensus disorder prediction 434 460 - -
Cca01g01197 2074 PANTHER OS09G0413600 PROTEIN 138 817 - -
Cca01g01197 2074 PANTHER OS09G0413600 PROTEIN 1 154 - -
Cca01g01197 2074 Gene3D - 1192 1280 IPR042197 -
Cca01g01197 2074 Gene3D - 1021 1185 IPR027417 -
Cca01g01197 2074 Pfam zinc-binding in reverse transcriptase 1931 2000 IPR026960 -
Cca01g01197 2074 SUPERFAMILY Toll/Interleukin receptor TIR domain 848 999 IPR035897 -
Cca01g01197 2074 Pfam Protein of unknown function (DUF1666) 597 816 IPR012870 -
Cca01g01197 2074 SMART till_3 856 996 IPR000157 GO:0007165
Cca01g01197 2074 Pfam NB-ARC domain 1038 1267 IPR002182 GO:0043531
Cca01g01197 2074 MobiDBLite consensus disorder prediction 304 323 - -
Cca01g01197 2074 Gene3D Ribonuclease Inhibitor 1372 1726 IPR032675 -
Cca01g01197 2074 ProSiteProfiles TIR domain profile. 855 1023 IPR000157 GO:0007165
Cca01g01197 2074 SUPERFAMILY L domain-like 1350 1721 - -
Cca01g01197 2074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1023 1286 IPR027417 -
Cca01g01197 2074 Pfam TIR domain 857 1026 IPR000157 GO:0007165
Cca01g01197 2074 SUPERFAMILY "Winged helix" DNA-binding domain 1263 1370 IPR036390 -
Cca01g01197 2074 MobiDBLite consensus disorder prediction 328 356 - -
Cca01g01197 2074 Gene3D - 853 1020 IPR035897 -
Cca01g01197 2074 PRINTS Disease resistance protein signature 1227 1241 - -
Cca01g01197 2074 PRINTS Disease resistance protein signature 1134 1148 - -
Cca01g01197 2074 PRINTS Disease resistance protein signature 1536 1552 - -
Cca01g01197 2074 PRINTS Disease resistance protein signature 1058 1073 - -
Cca01g01197 2074 MobiDBLite consensus disorder prediction 430 460 - -
Cca01g01197 2074 PANTHER DUF1666 FAMILY PROTEIN 138 817 - -
Cca01g01197 2074 PANTHER DUF1666 FAMILY PROTEIN 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01197 Cca-Chr1 19215392 19232806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01197 857 1691 WRKY Transcription Factor Family AT4G12020 32.908 3.07e-91 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01197 - - gmx:100810811 2057.72