Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01196 ATGGACTTGACCCCCACCTTAGATGCTGATACTAAAcccacccccccaatccaccccaccccaAAGTCTCTAACTTTCACCAGCGTCACACTGAAGCGCCACCCCACCACCACCGTTGGTcctccaccgccgccgccgccgtcgTCCATGGTGGTTTCCTACAAAGAATGCCTCAAAAACCACGCCGCCACCATAGGTGGCCATGCACTCGACGGCTGCGGCGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGACCCTCGCTCCCTCAAATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGaaccccaagaatcacacaacaacaacaacgtcaataacaaccttaacaccacaaacaccaacaacaacaacaaccttaactccacaaacaccaacaccaacaacaaccccaCTTTTCTCAACTGCATCTACACCCCTTCAGCAGCACCACCCCACCGGGCCATGAGCCAAAGCACGAGCCCGAGCCTGAGTTCAAGCCCGAGCCACAGTCCGAGCCCGATGTCAAGCCCGTCACCGCCGCCACTCTCGCACGTGCCACCCTCCTACCACGCTTCGGCGCCCCACATGCTTTTAGCCCTCGGCAGCGCCTATTCTGCACCCTCTGATGAACACCACCGAAAAAGTCTCAATTTTTCGCCCGTTATGATGAAGAGCGAGAACCCCAAGAAGAGGTACAGAACCAAGTTCAGCAAGGAGCAGAAGGAGAAGATGCATAGCTTCTCTGAGAAACTCGGGTGGAGAATGCAGAAAGGGGATGATGGGTTGGTTCAGGAATTTTGCAATGACATTGGGGTCCCTAGAGGGGTCTTCAAGGTTTGGATGCACAACAACAAGAACACTCTTAGGAAGAAACCAGAAGGTGGaaatgcaaatgcaaatgcaaatgaaaatgaaaatgaaattgcaaatgcTCCTCGTGATGGTAGCAATGCTAGTGGTGGTGGTGGATTTGATAGTGATATTAACAACCCCTACAACCCAAATAGCAGCAACAATGACATTCACATGAATGAAGAAGAAGATGGTTGTGTCAATGCTCATGTTTCTCTTAATGAGATGTCATCTTAA 1101 0.4305 MDLTPTLDADTKPTPPIHPTPKSLTFTSVTLKRHPTTTVGPPPPPPPSSMVVSYKECLKNHAATIGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRREPQESHNNNNVNNNLNTTNTNNNNNLNSTNTNTNNNPTFLNCIYTPSAAPPHRAMSQSTSPSLSSSPSHSPSPMSSPSPPPLSHVPPSYHASAPHMLLALGSAYSAPSDEHHRKSLNFSPVMMKSENPKKRYRTKFSKEQKEKMHSFSEKLGWRMQKGDDGLVQEFCNDIGVPRGVFKVWMHNNKNTLRKKPEGGNANANANENENEIANAPRDGSNASGGGGFDSDINNPYNPNSSNNDIHMNEEEDGCVNAHVSLNEMSS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01196 366 MobiDBLite consensus disorder prediction 155 175 - -
Cca01g01196 366 Gene3D - 225 294 - -
Cca01g01196 366 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 233 290 IPR006455 -
Cca01g01196 366 MobiDBLite consensus disorder prediction 110 147 - -
Cca01g01196 366 MobiDBLite consensus disorder prediction 311 348 - -
Cca01g01196 366 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 161 297 - -
Cca01g01196 366 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 136 - -
Cca01g01196 366 MobiDBLite consensus disorder prediction 211 245 - -
Cca01g01196 366 MobiDBLite consensus disorder prediction 1 28 - -
Cca01g01196 366 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11-LIKE 50 136 - -
Cca01g01196 366 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11-LIKE 161 297 - -
Cca01g01196 366 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 105 IPR006456 -
Cca01g01196 366 MobiDBLite consensus disorder prediction 326 344 - -
Cca01g01196 366 MobiDBLite consensus disorder prediction 176 191 - -
Cca01g01196 366 MobiDBLite consensus disorder prediction 104 193 - -
Cca01g01196 366 MobiDBLite consensus disorder prediction 230 245 - -
Cca01g01196 366 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 105 IPR006456 -
Cca01g01196 366 SUPERFAMILY Homeodomain-like 227 294 IPR009057 -
Cca01g01196 366 Pfam ZF-HD protein dimerisation region 52 106 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01196 Cca-Chr1 19154349 19155746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01196 50 292 ZF-HD Transcription Factor Family AT1G69600 46.400 3.21e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Cca01g01196 ZF-HD_dimer 2.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01196 - - vra:106766949 446.047