Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01195 atgCCCAAGGATGAAAATTCCCATTACCACCTAAAAGTCGCAGCTGAGCTTTTGATGTGTGATGAGAAGTCCCTTGAAGCCTCTTTCTGCAAACGTGTTATGGTGACTCGTGGTGACACCATAACAAAATCGCTTGATCCAACTTCTGCAGCTCTCAGTAGAGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGGACAAGATTAACAACTCTATTGGGCAAGATCCAGATTCAAATAACTTGATCGGGGTTCTAGATATATATGGATTTGAGAGTTTCAAGACAAACAGCTTTGAGCAATTTTGTATCAATTTGACAAATGAGAAATTACAGCAACATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATATACAAAGGAAGAGATTGATTGGAGTTATATCGAGTTCGTTGATAATCAAGATGTTCTTGATCTCATAGAGAAGGGCCAAAATGCATTTACTAGATCACGGGGTGGTCTTCCAGTTGGAGATGGAATATCTTTGAATTCTGGTGTGCATTCTGTTTCTGGTGTGAATCGTGTTGTGGGGGGTGGAGTTGAAAAGTTTGTTTCAGTTTTTTTCATTTTCTTTACAAAAACAACTTTATTCGGAAAAAAAAAATTGTTTGCTGAGGTTTTAGTGGCCACACTTATATTTGTTGCACTCTTGGATTTGACTAGTTAG 705 0.3787 MPKDENSHYHLKVAAELLMCDEKSLEASFCKRVMVTRGDTITKSLDPTSAALSRDALAKIVYSRLFDWIVDKINNSIGQDPDSNNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKGQNAFTRSRGGLPVGDGISLNSGVHSVSGVNRVVGGGVEKFVSVFFIFFTKTTLFGKKKLFAEVLVATLIFVALLDLTS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01195 234 Gene3D - 103 181 - -
Cca01g01195 234 PRINTS Myosin heavy chain signature 139 167 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca01g01195 234 PRINTS Myosin heavy chain signature 86 114 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca01g01195 234 SMART MYSc_2a 1 232 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca01g01195 234 PANTHER MYOSIN HEAVY CHAIN 4 156 - -
Cca01g01195 234 Pfam Myosin head (motor domain) 8 156 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca01g01195 234 PANTHER MYOSIN 4 156 - -
Cca01g01195 234 ProSiteProfiles Myosin motor domain profile. 1 234 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca01g01195 234 Gene3D Myosin VI head, motor domain, U50 subdomain 2 102 - -
Cca01g01195 234 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 156 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01195 Cca-Chr1 19089002 19093583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01195 2 155 Myosins gene family AT1G04600 86.364 5.81e-90 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01195 K10357 - ccaj:114917037 431.024