Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01194 ATGAGCGATCATCTGGTACTGTTCGTGGATCGTCTCGTGCGGCCCGTCCCCATGGAGCCGCTGGCCCAACATCCCGTCCAGCCCGCTCCCGAGCCCTCCACGCCCGTCGATGAGCCCAAGCCCGACCCCTCCGGCTCCTCTTCCATGGCGgaggacgacggcgacgacgaggacgCGCCACTACTTCCCCTGGCCGAGTGCCGCATTTGCCAAGAGGAGGACAATGTCAACAATTTAGAGTCTCCTTGTTCTTGCAGTGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTCCAACATTGGTGCAACGAGAAAGGGGACATAACTTGTGAGATATGTCACAAGTGCTATGAGCCTGGTTATACTATCCCGCCACCTCGTCCTCAGCCTGAAGAAACCACTATTGATATAGGTGGGGGCTGGACGATCTCTGGCACGCCGTTGGATTTGCGTGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAATTCTTGGAGGCTGAGTATGATGGATATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGTCGTTCAGCTGCACTGATTTTAATGGCCCTTTTACTCTTGAGGCATGCACTTTCTGTCACAGATGCTGATGCTGATGATGATCCATCCACCTTTTTCTCTCTTTTCTTACTACGAGCTGCTGGTTTTCTTTTACCTTGCTACATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGACGACAAAGACAAGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCATTCGTTCTACAATCTGGGCAGCGTAGGGGTCTGCAATTTGCCATAGCACCAGGACCAACAATGAACACACACCAAGAACAAGTGTAA 858 0.5012 MSDHLVLFVDRLVRPVPMEPLAQHPVQPAPEPSTPVDEPKPDPSGSSSMAEDDGDDEDAPLLPLAECRICQEEDNVNNLESPCSCSGSLKYAHRKCVQHWCNEKGDITCEICHKCYEPGYTIPPPRPQPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALSVTDADADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPTMNTHQEQV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01194 285 MobiDBLite consensus disorder prediction 19 58 - -
Cca01g01194 285 MobiDBLite consensus disorder prediction 21 39 - -
Cca01g01194 285 ProSiteProfiles Zinc finger RING-CH-type profile. 59 119 IPR011016 GO:0008270
Cca01g01194 285 Pfam RING-variant domain 67 112 IPR011016 GO:0008270
Cca01g01194 285 SMART ringv_2 66 113 IPR011016 GO:0008270
Cca01g01194 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 121 IPR013083 -
Cca01g01194 285 CDD RING_CH-C4HC3_MARCH 67 113 - -
Cca01g01194 285 Pfam Protein of unknown function (DUF3675) 118 236 IPR022143 -
Cca01g01194 285 Coils Coil 155 175 - -
Cca01g01194 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 273 - -
Cca01g01194 285 SUPERFAMILY RING/U-box 66 116 - -
Cca01g01194 285 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 273 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01194 Cca-Chr1 19075133 19077780 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01194 55 142 C3H Transcription Factor Family AT2G37950 37.000 5.93e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01194 - - gmx:100817542 475.707