Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01188 ATGGATCTGCAAAATCAAACTATGCGTTTGGTTCTCTCAACTGATGCCAAGCCTAGGCTGAAATGGACTCCTGAGCTTCACCAACGCTTCACTGAGGCTATTAATCAGCTTGGAGGTGCAGAAAAGGCAACTCCAAAGAGTCTTATGAGAGTGATGGGGATTCCAGGACTCACTTTGTACCACCTCAAGAGCCATTTACAGAAATTTAGGCTTGGGAAAAGCCAACAGCTAGAAACCTGCTCTGACAACACGCAACAAGGTTACAGTGAAATCCAGAGCAGTGATGGTCATTGCAACAATGAAAATAGTATTGGGACCCAGAATCAGATGACCGAAAGCTTGAAGATTGCTCAGGCTCTCGAAATGCAAATGGAAGTACAAAGAAAACTTTATGAGCAAATTGAGGTCCAGAGACATTTGCAGTTTCGAATTGAAGCACAAGGGAAGTACTTACAAACAGTACTAACAAAGGCACAGGAAACACTTGTAAGACACAGTTCTTCCACAACGGGTATAGAACTTGCAAAAGCTGAACTTTCTCAGTTAGTGTCAATAATCAACAATGCATGTCCAAGCTCTCCCATTTCAGAACTGACAGAAACAAGAGGGCTCAGTTTGAACCATGGAGAGAGGAAACAAGACAGAGGAACCATGTGTTCATTTGAAAGTTCTTTGACATCATCTGAAAGTTCTGGGAGAACAGAAGAAAATCAACCAATGGATGAGGCAGAAAACCCTCAAAAGTTTAATAGTGTTTCCGTTGAATTGCCATTGTTGGCCATTCACCCAGAAGATAGAGCATTCAAGGGAGATACAAGTGATGGAGAAAGTGGGAGAAAGAGAAGTACAGTAACTGATTCTGATGGTGGCTCTGTTGATCAACCTTGTGGAAAAAGATGTGGCAACAAGTTGAGGAAATCAGAAGTGTCAGAAATGCTTGACTTGAACAGCCAATATCAGAGAGACATTGACTCAAGTGTGAAAGAAATTGATTTAAATTGCAGTTCAAGCTTTTGGGGACAATAA 1026 0.4162 MDLQNQTMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKFRLGKSQQLETCSDNTQQGYSEIQSSDGHCNNENSIGTQNQMTESLKIAQALEMQMEVQRKLYEQIEVQRHLQFRIEAQGKYLQTVLTKAQETLVRHSSSTTGIELAKAELSQLVSIINNACPSSPISELTETRGLSLNHGERKQDRGTMCSFESSLTSSESSGRTEENQPMDEAENPQKFNSVSVELPLLAIHPEDRAFKGDTSDGESGRKRSTVTDSDGGSVDQPCGKRCGNKLRKSEVSEMLDLNSQYQRDIDSSVKEIDLNCSSSFWGQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01188 341 Pfam Myb-like DNA-binding domain 19 68 IPR001005 -
Cca01g01188 341 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
Cca01g01188 341 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 338 - -
Cca01g01188 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 338 IPR044848 GO:0003700
Cca01g01188 341 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
Cca01g01188 341 MobiDBLite consensus disorder prediction 262 303 - -
Cca01g01188 341 MobiDBLite consensus disorder prediction 206 248 - -
Cca01g01188 341 MobiDBLite consensus disorder prediction 262 283 - -
Cca01g01188 341 Pfam MYB-CC type transfactor, LHEQLE motif 115 161 IPR025756 -
Cca01g01188 341 MobiDBLite consensus disorder prediction 218 234 - -
Cca01g01188 341 Coils Coil 117 137 - -
Cca01g01188 341 Gene3D - 16 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01188 Cca-Chr1 18687766 18689976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01188 1 299 G2-like Transcription Factor Family AT1G69580 45.806 4.64e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca01g01188 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01188 - - gmx:100805252 523.472