Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01187 atgttagacataattgaaggggaagtaacaaataattggattgagctttttgatgatgttgcaccattgccggaaatcaaattggaagatatttggaAGAATGAGGAGGGGTCGGATGTTACTTTCCCTGTAGGTGGAGAAAGGTTTCATGTGCATAAGCTTGTTTTGGCTGCCCGGTCAACTGCATTTGAAACCGAGTTTTTTAATGGGATGGAGGAAGATGATCGTGACATAGTTGTTAGTGATATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGACTTTCTTATTGA 303 0.2739 MLDIIEGEVTNNWIELFDDVAPLPEIKLEDIWKNEEGSDVTFPVGGERFHVHKLVLAARSTAFETEFFNGMEEDDRDIVVSDMEPKVFKALLHFIYRLSY 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01187 100 Pfam BTB/POZ domain 29 97 IPR000210 GO:0005515
Cca01g01187 100 SUPERFAMILY POZ domain 28 96 IPR011333 -
Cca01g01187 100 Gene3D Potassium Channel Kv1.1; Chain A 26 100 IPR011333 -
Cca01g01187 100 ProSiteProfiles BTB domain profile. 38 100 IPR000210 GO:0005515
Cca01g01187 100 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 33 99 IPR045005 GO:0016567
Cca01g01187 100 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 33 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01187 Cca-Chr1 18675585 18676320 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca01g01187 BTB 1.9e-19 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01187 K10523 - ccaj:109809032 143.28