Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01186 atggccaggagattacttgaagacttgactgcttcagagcttagtgggcccaatgggcttggtgggcccatgctttgccatcaCATTCCACTGTTGAAAAGGTACATGGATACTCAATTTGATCCACAAGACTCCCCTGCTCCTCAAGGCTCCCCTACTCCTCAAGGCTCCGCTGCTCCTCAAGGCTCCACTGCTCCTCAAGACTCCCCTGCTCCTCAAGGCTCCGCTGCTCCTACACCCCCTGCTTCACAGACTATATCTAAGAAAAAGGGGAAGCCGACACGAATGAAAAGCTTAGCCCGTAAGCACATGAATGGGGCAAAAATATCACTTGACGTGAATCCCACTTCTGGGATAGTTTCAGGGTCAAACAAAGTCCAATTTGCAAGTTATCTAGGAACCCTTGCTTTGAGGAGTTTCGTAGCTATCAAGATTTTGTTCGGCTACTTGCAGTTGAGGGTTGTGCAGCTCTTGGAAAACTGTTGGAACCTCAAGATTGTGTGGCACCAGccgaatgttcaaataaaaaatttaattaaaagtgttatggttgtctataatgtcatggggggtagatctacagcacaaccaaagaacctagattggatttatcccatgCTTTTTGATGATGTTGCACCATTGCCGGAAACCAAATTGGAAGACATTCGAAAGAATGAGGAGGGGTCGGATGTTACTTTCTCTGTAGGTGGAGAAAGGTTTCATGCGCATAAGCTTGTTTTGGCTGCCCGGTCAACTACATTTGAAACCGAGTTTTTTAATGGGATGGAGGAAGATGATCGTGACATAGTTGTTACTGATATGGAACCTAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACCCTCTTATTCATGATGAAGAGCTCTTTACGTCATGA 903 0.3588 MARRLLEDLTASELSGPNGLGGPMLCHHIPLLKRYMDTQFDPQDSPAPQGSPTPQGSAAPQGSTAPQDSPAPQGSAAPTPPASQTISKKKGKPTRMKSLARKHMNGAKISLDVNPTSGIVSGSNKVQFASYLGTLALRSFVAIKILFGYLQLRVVQLLENCWNLKIVWHQPNVQIKNLIKSVMVVYNVMGGRSTAQPKNLDWIYPMLFDDVAPLPETKLEDIRKNEEGSDVTFSVGGERFHAHKLVLAARSTTFETEFFNGMEEDDRDIVVTDMEPKVFKALLHFIYRDPLIHDEELFTS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01186 300 MobiDBLite consensus disorder prediction 38 96 - -
Cca01g01186 300 MobiDBLite consensus disorder prediction 42 89 - -
Cca01g01186 300 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 224 300 - -
Cca01g01186 300 Gene3D Potassium Channel Kv1.1; Chain A 216 299 IPR011333 -
Cca01g01186 300 SUPERFAMILY POZ domain 217 296 IPR011333 -
Cca01g01186 300 ProSiteProfiles BTB domain profile. 229 295 IPR000210 GO:0005515
Cca01g01186 300 SMART BTB_4 229 300 IPR000210 GO:0005515
Cca01g01186 300 MobiDBLite consensus disorder prediction 1 22 - -
Cca01g01186 300 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 224 300 IPR045005 GO:0016567
Cca01g01186 300 Pfam BTB/POZ domain 219 293 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01186 Cca-Chr1 18608028 18616697 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca01g01186 BTB 1.2e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01186 K10523 - ccaj:109809032 194.897