Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01182 ATGGATTGTGAATACGTGTTGACCAAATTGATTATTGCTTTTGAGCTTTTTCATGAAAATAGACTGTTTTATCTTGCAAGACTGCCTATTGGTTACAAGGGTTGTCAATTTCATAGAGTTATTAAGGATTTTATGATTCAGGCTGGTGATTTTGTAAAGGGTGATGGTAGTGGATGTGTTTCCATGTATGGACTCAAGTTGGATGATGAAAACTTCACCGCCAAACACACTGGCCCTGGCCTTCTGTTGATAACCAACCCAGTTCAGAGTGTCGAGAAAACATTTCAACTTACTAGAGCAGACAAAGGCTTGGTTTCAAAACCAGAATTTGATGTTGAGGCTTGGTGTATGCTTCTGAACGACAAGGTTCCATTCAGGATGCAGTGGGTGCCACTGTATGCAGACCTGCAGGTCAATGGTGTTCCCGTTCGTGCAACTAACAGACCTGGTTCCCAATTGCTTGGTGCTAATGGTCGGGATGACGGTCCAATTGTTCGTATTGTTCGAAAGCGCAGTATGCAGCAGGTAGATTGCATTCAAAGCTTGATAAATTTACAAGCAAACTATTTTGAATTGCTGTTGGTTCCTTAA 591 0.4162 MDCEYVLTKLIIAFELFHENRLFYLARLPIGYKGCQFHRVIKDFMIQAGDFVKGDGSGCVSMYGLKLDDENFTAKHTGPGLLLITNPVQSVEKTFQLTRADKGLVSKPEFDVEAWCMLLNDKVPFRMQWVPLYADLQVNGVPVRATNRPGSQLLGANGRDDGPIVRIVRKRSMQQVDCIQSLINLQANYFELLLVP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01182 196 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 32 49 IPR020892 GO:0003755|GO:0006457
Cca01g01182 196 SUPERFAMILY Cyclophilin-like 25 86 IPR029000 -
Cca01g01182 196 Gene3D - 11 107 IPR029000 -
Cca01g01182 196 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 31 95 IPR002130 GO:0000413|GO:0003755
Cca01g01182 196 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 30 154 IPR002130 GO:0000413|GO:0003755
Cca01g01182 196 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 85 169 - -
Cca01g01182 196 PANTHER SAP DOMAIN-CONTAINING PROTEIN-RELATED 85 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01182 Cca-Chr1 18422228 18424532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01182 32 86 U-box Gene Family AT5G67530 42.857 4.57e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01182 - - ccaj:109797651 230.335