Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01178 ATGAAGGCTTGGCCTGCAAGTGCTGTGTACTCTTCACAAGAGAACACTTCTTCCTATTCTTCTTCCTCTCCTCCAATGGGAATGGTCTATGCTGACATGGATTCTCTTTCTCTTTGTTCCAACTATGGTGTGGTTTCGTCTCACCAAGACTGCTATGTCTCCAATGGGGGCACAAACTGGGGTCTGCCCTTTGTGAGGGAATGCCTTGGGAGGAACTTCGAGGAACACCCCAACAGTGATGGAGTGGAAGAGGGTAAAGGGTCTGATAGCAGTGATGATGCGGGTGGGGAAGACAGTGAGAAAGTTAACCATAATGCTAATAACTTTAGCGAGGAGAACCCTAATGAGAATTCTCTCACTGGTTCCGGCCACTCCAAGCTCTGTGCAAGAGGGCATTGGAGACCTGCAGAAGATTCCAAGCTCAAGGAACTTGTGGCTCTTTATGGCCCTCAGAACTGGAACCTCATAGCTGAGAAGTTAGAAGGAAGATCAGGCAAGAGTTGTAGACTGAGGTGGTTCAACCAGTTGGACCCAAGGATCAATAGGAGAGCATTCAGTGAAGAGGAGGAAGAGAGGCTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATTATGGCCAGAAAGTACAGAGAACAGTCTAGTGCCTACAGGAGGAGGAGGCTGAGCCAATCTGTTTACAGAAGAGTGGAGGAGAACACAGAAAGCAGCATTGTCTCTAGAGACATAGCCACTGCAGGGACAGAACCACCACCACCACCCTATTGTCTCAATCTCCCCAATGTAGCACTTGCCAACAGTAACATGACTAGTTTTCCATATGCTGCTGCACCCTTCCATGGAGTCGTGGCTCCTAATGGTGGGGTTGAGTTTGGCTTAAATGCTGCCAAAGAAGCAATCTCAACCACCAAGCTGGCCCCTCCTCATATTGCCTTGTATCCTCAACAAACACCACTTGATTTCATTTCAGGTGTTAGAAGCAATGACTACTTTGGGCAGAACAGATGCTGGGAGAGGCCTAGTGATGCAGCACCCCATCAGCAACCATCTGGTTTCTACCCTCACTACCCCCAATATGTGATGCTAATGCAGCAGCAGCAAAACTGCAATCACAACAACTTTTACGGTTTATCAAATTCCACGGCACAAATATTGGGCAGTGAAGCCTCACTATCAGCAGTGGCAGAACACAGAGATGGAGCCGTGAGTAGTGACCCCCCAGATGCAATTCCACCTCCATTTATTGACTTCCTTGGAGTAGGAGCCACATGA 1335 0.4809 MKAWPASAVYSSQENTSSYSSSSPPMGMVYADMDSLSLCSNYGVVSSHQDCYVSNGGTNWGLPFVRECLGRNFEEHPNSDGVEEGKGSDSSDDAGGEDSEKVNHNANNFSEENPNENSLTGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRVEENTESSIVSRDIATAGTEPPPPPYCLNLPNVALANSNMTSFPYAAAPFHGVVAPNGGVEFGLNAAKEAISTTKLAPPHIALYPQQTPLDFISGVRSNDYFGQNRCWERPSDAAPHQQPSGFYPHYPQYVMLMQQQQNCNHNNFYGLSNSTAQILGSEASLSAVAEHRDGAVSSDPPDAIPPPFIDFLGVGAT 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01178 444 SUPERFAMILY Homeodomain-like 130 223 IPR009057 -
Cca01g01178 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 231 IPR017930 -
Cca01g01178 444 MobiDBLite consensus disorder prediction 75 100 - -
Cca01g01178 444 Pfam Myb-like DNA-binding domain 130 176 IPR001005 -
Cca01g01178 444 Pfam Myb-like DNA-binding domain 182 225 IPR001005 -
Cca01g01178 444 ProSiteProfiles Myb-like domain profile. 130 176 IPR001005 -
Cca01g01178 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 176 IPR017930 -
Cca01g01178 444 SMART sant 181 229 IPR001005 -
Cca01g01178 444 SMART sant 129 178 IPR001005 -
Cca01g01178 444 MobiDBLite consensus disorder prediction 1 23 - -
Cca01g01178 444 MobiDBLite consensus disorder prediction 8 23 - -
Cca01g01178 444 PANTHER MYB TRANSCRIPTION FACTOR 26 444 - -
Cca01g01178 444 ProSiteProfiles Myb-like domain profile. 177 227 IPR001005 -
Cca01g01178 444 MobiDBLite consensus disorder prediction 101 124 - -
Cca01g01178 444 CDD SANT 133 174 IPR001005 -
Cca01g01178 444 Gene3D - 183 255 - -
Cca01g01178 444 PANTHER MYB PROTEIN-RELATED 26 444 - -
Cca01g01178 444 CDD SANT 184 224 IPR001005 -
Cca01g01178 444 MobiDBLite consensus disorder prediction 75 124 - -
Cca01g01178 444 Gene3D - 130 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01178 Cca-Chr1 18385734 18388077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01178 22 247 MYB Transcription Factor Family AT1G69560 55.882 4.89e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca01g01178 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01178 K09422 - gmx:100810632 558.91