Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01177 ATGGGCAGGGTAAAGTTAAAGATAAAACGGTTGGAGAACACCAATGGTCGCCAAGCAACATATGCTAAACGGAAAAATGGAATTATGAAAAAAGCTGCTGAATTATCTATATTGTGTGATATAGATATTATACTTCTTATGTTTGCACCAAATGGAAAGCCTTCATTATGCAGGGGGAGACGCAGTAACTTAGATGAGGTTATTGCGAAGTTTGCTCAACTAACTCCTCAGGAAAGGGCAAAAAGGAAGTTGGAAACTCTTGAAGCATTGAAGAAGACCTTCAAGAAGTTAGATCATGATGTAAATATACAAGAATTTCTGGGCACCAGTAGTCAAACTATTGAGGATTTGAGTAATCAAGCCAGGCTATTACAAACTCAAATTTCTGAAACTCACAAGAGATTAAGTCATTGGAATGAGTTTGATAAAATAAGCAGTGTGGAACAACTAGGACAGATGGAAAATTCACTCAGGGAGTCACTTAATCAAATTCGAACCCGCAAGCAACTTGTGTCAATGCAATGCAATAACCAGTTCAATGACATGAATATACCCTTTAGAATGAGTTCAGAGCAGCATCTCCAACCTCTGTCGTGGATTGCCAATGGTGACAGCCAAAATATAGTTTTACCCGAGGACTCAAACATGTTTCTCCACAAAGATGTAGAGGGATCTGCAAGTTCATCTTTTGGGAGTTATGCTAGTTATCTTGGCTCAAGTATCAAAACTGAGATGTCTAACTCGGCACAAGAAAATGGGGTCCTCAGTGACTTGAGCAGTACTGCCCCTATGAGACTACAATTGAATGGCCAATTTCCATACCTTCCATACAATTTTAATTTACTGAACAATTTGAAGTTTCAACCAACTGCAGAGATCAACCCACATGAAAATCCTGTAGATTATCATGTGAATGGAAGCTTTGATGCACCTCGATCTGGTTATGACTCTAATCACCATGGTTGGGCTTCCTCATCAGGGCCTTGTGCTGTTACTATGTTTGACGAGCAGTTATATGCCCAGCAGCAAAATTGA 1035 0.3952 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSLCRGRRSNLDEVIAKFAQLTPQERAKRKLETLEALKKTFKKLDHDVNIQEFLGTSSQTIEDLSNQARLLQTQISETHKRLSHWNEFDKISSVEQLGQMENSLRESLNQIRTRKQLVSMQCNNQFNDMNIPFRMSSEQHLQPLSWIANGDSQNIVLPEDSNMFLHKDVEGSASSSFGSYASYLGSSIKTEMSNSAQENGVLSDLSSTAPMRLQLNGQFPYLPYNFNLLNNLKFQPTAEINPHENPVDYHVNGSFDAPRSGYDSNHHGWASSSGPCAVTMFDEQLYAQQQN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01177 344 CDD MADS 2 54 - -
Cca01g01177 344 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Cca01g01177 344 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Cca01g01177 344 Coils Coil 77 97 - -
Cca01g01177 344 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca01g01177 344 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cca01g01177 344 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 343 - -
Cca01g01177 344 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 343 - -
Cca01g01177 344 Coils Coil 114 134 - -
Cca01g01177 344 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Cca01g01177 344 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca01g01177 344 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca01g01177 344 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01177 Cca-Chr1 18308928 18315086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01177 1 343 Type I MADS-box Gene Family AT2G03060 49.474 1.64e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Cca01g01177 SRF-TF 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01177 - - gmx:100811701 590.882