Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01172 ATGGAGGCTAGCACATGCTCAGAACTTCCCCCTGGCTTTAGGTTTCACCCAACGGACGAGGAACTGATTGTGTATTATCTTTGTAACCAAGCCACATCAAAGCCATGCCCTGCATCTATCATCCCAGAAGTGGATATTTACAAGTTTGATCCATGGCAATTACCAGATAAAACAGAATTTGGAGAAAATGAATGGTATTTCTTTAGTCCACGAGATAGGAAGTACCCAAATGGGGTGAGGCCAAACCGAGCAACTGTGTCTGGGTATTGGAAGGCTACTGGCACAGACAAGGCAATCTACAGTGGATCTAAGAGTGTTGGGGTGAAGAAATCTTTAGTCTTTTACAAGGGTAGGCCACCAAAGGGCACAAAAACTGATTGGATTATGCATGAGTATAGATTGGCTGAATCAAAAAAACCAGTTTGCAGGAAAATTGGGTCCATGAGGCTGGATGACTGGGTCTTGTGCAGGATCTACAAGAAGAAGCACATGGGAAAAACATTGGAGCACAAAGAGGTACACCCAACAGTCCAAATTACTAATCTTACAGCTGCAAATAGTGATGAACAGAAAATGATGATGAACCTTCCAAGGACTTGGTCCCTTACTTACCTTTTGGATATGAATTACTTGGGTCCAATTTTAAGTGATGGCTCCTATTGCTCAACCTTTGATTTTCAAATTAACAATGCCAATTTTGGAATAGACCCTTCTGTGAAATCTCAACCGGTTGAAATGACCAACAATTATGTAGCAGATTCAGGAAAGTACCAAGTGATGAAACAGAGTAGCACCATTGACCAGCCCATATGTGTGAAGCAAATGTATAATTGCTAG 837 0.417 MEASTCSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWQLPDKTEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSGSKSVGVKKSLVFYKGRPPKGTKTDWIMHEYRLAESKKPVCRKIGSMRLDDWVLCRIYKKKHMGKTLEHKEVHPTVQITNLTAANSDEQKMMMNLPRTWSLTYLLDMNYLGPILSDGSYCSTFDFQINNANFGIDPSVKSQPVEMTNNYVADSGKYQVMKQSSTIDQPICVKQMYNC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01172 278 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Cca01g01172 278 PANTHER BNAC06G30680D PROTEIN 4 227 - -
Cca01g01172 278 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Cca01g01172 278 PANTHER NAC TRANSCRIPTION FACTOR 56 4 227 - -
Cca01g01172 278 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Cca01g01172 278 SUPERFAMILY NAC domain 6 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01172 Cca-Chr1 18141567 18143193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01172 1 225 NAC Transcription Factor Family AT1G69490 66.949 6.57e-113 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca01g01172 NAM 6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01172 - - gmx:100785110 490.345