Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01170 atggcagaagaagaagaaCACTTACAAGAACTCAGATCCAAAGCCACAGAGCTTTTCCTGAGAGAAGAATGGAACGCTTCAATCGAAGCCTATTCCCACTTCATAACCCAAACCCTTTCCCACTCTCATCCAAACCCAAAGCTTCGCAAATCCCTCTGCATAGCTCTCTGCAACCGCGCCGAAGCGAGGTCGAAGCTCAAGTACTTCAATCTCGCCCTTGGAGACTGCGACCACGCTTTGGAGCTCGACGCCACGCATTCAAAGACCCTTTTGTGCAAAGGCAAGATCTTGCTCAGCCTCAACCGCTACTCCTCCGCCCTGGAGTGCTTCCGCTCCGCCACGCTTGATGGGGCCAACGAGAACGTTAATGGGTACTTGGAACGGTGCAAAAGTTTGGAGCTTTTGTCGCGGACGGGGTGTTTGGATCTCTCGGATTGGGTCGCGAATGGGTTTCGCGGGAGGGTTCCAGAGCTCGCGGAGCATGTTGGTGCGGTGGAGATTAGGAAATCTGAGGTTAGTGGAAGAGGGTTGTTTGTGACCAAGAATGTTGATTCTGGGTCGGTGATTTTGGTGACCAAGGCGATTGCCATGGAGAGGAGTATCATAGTGGGAGGGGTTCAGGATTTGGGCGAGGATGCACAGTTGGCGATGTGGAAGAATTTCATCCACAAGGTTTCTGAGTGTGTTGGCAAGTGTGCCAGGACAAGGGGTTTGGTGGGTTTGTTGTCGTGTGGGGAGAACGAGGATGAGCTTGAGGTGCCTGATGTTGGTGTCTTTAGGCCTGAGTGTGTGGAGAAGGATGAAGTTGAAGTTGGTGTTGACATGGTTGAGTTGGTTGGTGTTTTGGATGTTAATTCTCTCACTGAGGATGCTGTTTCAGCCAATGTGTTGAGGAGGGGGAATGATTGTTATGGTGTGGGGTTGTGGTTGCTACCTTCCTTCATAAACCACTCTTGTTGTCCCAATGCAAGGAGGTTGCATGTTGGGGACTACTTGGTGGTTCATGCTTCCAAGGATTTGAAGGCTGGTGAGGAGGTCACTTTTGCATATCTTGACCCTTTGTGTGGTTTGAGCAAGAGAAGGGAGATGGGGATAAATTGGGGGATTCATTGCAAGTGCAAGAGGTGTAGGTTTGAGGGGGAAGTGTTCTCCAAAGTGGAGATAAGAGAGATTGAGATTGGTCTTGAGAGAGGGATGGATGTGGGGGGTGTGGTGTACAAGTTGGAGGAGCAAATGAAGAGGTGGAAGGTTAGGGGGAAGGAGAAAGGGTACTTGAGGGCTTCATTTTGGGAAGCATATTGTGAGGCTTATAGGTCTGAGAGGGCCATGAAGAGGTGGGGAAGGAGGATTCCCTCAGTGGAGGCTGTGGTTGATAGCATCAGTGATGTGGTGGGAGGGGATCACAGGTTGCTTAAGATGCTGATGGAGGAGATGAAGAAAAGTAGTGGTGCAGGTTTGGAGAGGGAGAAGCTTTTCAAGATGGCAAGAGATGTGTTTGGCAAGGTTGTGAAAAAGCAAGCAATGAAGACACTTCTTGAACTCTGCATTGCTGATTGA 1557 0.4952 MAEEEEHLQELRSKATELFLREEWNASIEAYSHFITQTLSHSHPNPKLRKSLCIALCNRAEARSKLKYFNLALGDCDHALELDATHSKTLLCKGKILLSLNRYSSALECFRSATLDGANENVNGYLERCKSLELLSRTGCLDLSDWVANGFRGRVPELAEHVGAVEIRKSEVSGRGLFVTKNVDSGSVILVTKAIAMERSIIVGGVQDLGEDAQLAMWKNFIHKVSECVGKCARTRGLVGLLSCGENEDELEVPDVGVFRPECVEKDEVEVGVDMVELVGVLDVNSLTEDAVSANVLRRGNDCYGVGLWLLPSFINHSCCPNARRLHVGDYLVVHASKDLKAGEEVTFAYLDPLCGLSKRREMGINWGIHCKCKRCRFEGEVFSKVEIREIEIGLERGMDVGGVVYKLEEQMKRWKVRGKEKGYLRASFWEAYCEAYRSERAMKRWGRRIPSVEAVVDSISDVVGGDHRLLKMLMEEMKKSSGAGLEREKLFKMARDVFGKVVKKQAMKTLLELCIAD 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01170 518 Pfam SET domain 303 350 IPR001214 GO:0005515
Cca01g01170 518 Gene3D Tetratricopeptide repeat domain 2 136 IPR011990 GO:0005515
Cca01g01170 518 SUPERFAMILY TPR-like 5 114 IPR011990 GO:0005515
Cca01g01170 518 Coils Coil 1 21 - -
Cca01g01170 518 Gene3D SET domain 256 380 IPR046341 -
Cca01g01170 518 SMART set_7 163 357 IPR001214 GO:0005515
Cca01g01170 518 ProSiteProfiles SET domain profile. 163 351 IPR001214 GO:0005515
Cca01g01170 518 CDD SET_SMYD 297 376 - -
Cca01g01170 518 SMART tpr_5 87 119 IPR019734 GO:0005515
Cca01g01170 518 SMART tpr_5 53 86 IPR019734 GO:0005515
Cca01g01170 518 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 498 - -
Cca01g01170 518 SUPERFAMILY SET domain 164 376 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca01g01170 SET 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01170 - - gmx:100812233 882.478