Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01164 ATGGCTAGTGTTTTTTCTGCATGTTCAGGTTCTGCTCTTCTCTTTCACACCAAATGCTTCTTCCCCTCTGCAGCCAAAGGGCCACCCCTTCACCTCAATAGGCCCCATCTCTCTGCTGCCAACTGTGTGGCTTCTTTAGGGACCGAGATATCAGTGCCTCCAGCAGTTGACACTTTCTGGCAGTGGCTCAAGGAAGAAGGTGTTGTCTCTGCCAAGACCCCAGTGAAGCCTGGAGTGGTGCCAGAAGGCCTAGGACTGGTTGCACTCAAAGATATTTCTAGGAATGAGGTTGTTTTGCAGGTCCCCAAGAGGCTCTGGATTAACCCTGATGCTGTGGCAGCTTCAGAGATTGGGAAAGTGTGTAGTGGATTGAAGCCTTGGTTGGCTGTTGCACTGTTTTTGATAAGAGAGAGGTCAAGGGCTGATTCTATTTGGAAGCACTACTTTGCTGTTCTGCCAAAGGAAACTGACTCTACTATATATTGTTTTTCACTGGTTGAACTGATTTGTGTAGGGACTCAACTTCTAAACACAACACTGAGTGTGAAAGAGTATGTGCAGAATGAATTTAGGAGATTGGAAGAAGAAATTATACTCCCTAACAAAAACCTTTTCCCTTCCCCTATTACACTTGATGACTTCTTCTGGGCGTTTGGAATTCTAAGATCAAGGGCTTTTTCTCGACTTCGCAATGAAAATCTAGTTGTGATTCCCCTAGCTGACTTGATAAACCATAGTGCCAGAGTAACTACAGAAGATCATGCTTATGAAATTAAAGGAGCAGCAGGCCTATTCTCCTGGGATTACCTATTTTCCCTTAGGAGCCCCCTTTCTCTCAAGGCTGGAGATCAGGTATATATCCAATATGATTTAAACAAAAGCAACGCTGAGTTGGCTTTGGACTACGGTTTCATTGAACCAAATGCAGATCGGAATGCATATACATTGACACTGCAGATATCTGAGTCAGACCCCTTTTATGATGACAAACTAGACATTGCTGAGTCTAGTGGTTTTGGTGAGAAAGCATACTTTGACATCTTCCACAACCAGCCCCTTCCACCAGGGTTGCTTCCATATCTGAGACTAGTAGCTGTTGGGGGCACTGATGCATTCCTATTGGAGTCACTGTTTAGAAACTCCATCTGGGGCCATCTTGAAGTGCCTGTGAGCCGTGACAATGAAGAGCTAATATGTAGAGTGGTTAGAGAGACCTGCAAAACTGCACTCGCTGGTTATCATACAACCATTGAAGAGGATCAAAAGTTGAAAGAAACAAAGCTAGATTCAAGACTTGCTATAGCAGTTGGAATCAGAGAAGGGGAGAAGAAGCTCCTGCAGCAAATTGATGAGATTTTCAAGGAGAAAGAATTGGAATTGGACCAGTTAGAATATTATCAAGAAAGGAGGCTCAAGGACCTCGGACTTTGCGGGGAAAATGGTGATATCCTTGGTGACCTTGGAAAATTCTTCTAG 1476 0.4424 MASVFSACSGSALLFHTKCFFPSAAKGPPLHLNRPHLSAANCVASLGTEISVPPAVDTFWQWLKEEGVVSAKTPVKPGVVPEGLGLVALKDISRNEVVLQVPKRLWINPDAVAASEIGKVCSGLKPWLAVALFLIRERSRADSIWKHYFAVLPKETDSTIYCFSLVELICVGTQLLNTTLSVKEYVQNEFRRLEEEIILPNKNLFPSPITLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSLKAGDQVYIQYDLNKSNAELALDYGFIEPNADRNAYTLTLQISESDPFYDDKLDIAESSGFGEKAYFDIFHNQPLPPGLLPYLRLVAVGGTDAFLLESLFRNSIWGHLEVPVSRDNEELICRVVRETCKTALAGYHTTIEEDQKLKETKLDSRLAIAVGIREGEKKLLQQIDEIFKEKELELDQLEYYQERRLKDLGLCGENGDILGDLGKFF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01164 491 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 37 482 - -
Cca01g01164 491 SMART set_7 71 296 IPR001214 GO:0005515
Cca01g01164 491 PIRSF RMT_SET 1 490 IPR011192 GO:0009507|GO:0030785
Cca01g01164 491 Gene3D - 306 470 IPR036464 -
Cca01g01164 491 Gene3D set domain protein methyltransferase, domain 1 52 305 - -
Cca01g01164 491 SUPERFAMILY SET domain 54 310 IPR046341 -
Cca01g01164 491 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 313 484 IPR036464 -
Cca01g01164 491 Pfam SET domain 83 289 IPR001214 GO:0005515
Cca01g01164 491 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 22 489 IPR011192 GO:0009507|GO:0030785
Cca01g01164 491 ProSiteProfiles SET domain profile. 66 290 IPR001214 GO:0005515
Cca01g01164 491 CDD SET_RBCMT 67 305 IPR044431 GO:0016279|GO:0018022
Cca01g01164 491 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 37 482 - -
Cca01g01164 491 Pfam Rubisco LSMT substrate-binding 322 446 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01164 Cca-Chr1 17860706 17864401 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca01g01164 SET 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01164 K00592 - gmx:100818113 850.121