Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01161 ATGAGTTCCGGTAGCAGTGATAGCaaggagaaggagaaggagaagcagagggtgaGTCGCACGTCGTTGATTCTGTGGCACGCGCACCAAAACGACGCCGCAGCGGTGCGGAAGCTCCTTCAGGAGGATCCTTCGCTCGTCAAGGCGAGGGATTACGACAACCGCACTCCGCTCCACGTCGCCTCCCTCCACGGCTGGATCGACGTCGCCACCTGTCTGATTGAGTTCGGCGCCGACGTCAACGCGCAGGATCGTTGGAAAAACACTCCTCTGGCTGATGCCGAAGGCGCTAAGAAGAACAACGTCATCGAGCTTCTGCGATCGCATGGAGGCTTGTCTTTTGGGCAAAATGGAAGCCATTTTGAGCCCAAGCCTGTTCCGCCGCCGTTGCCGAACAAGTGTGATTGGGAAATCGACCCTTCTGAGCTTGACTTCACCAACTCCACGCGAATTGGAAAGGGTTCTTTTGGTGAAATTTTAAAAGCCCTTTGGCGTGGAACACCAGTTGCTGTTAAACGTATTCTTCCATCTCTTTCAGAAGATAGATTGGTGATTCAGGACTTCAGGCATGAGGTCAATTTGTTAGTGAAGCTTCGACACCCCAATATAGTTCAGTTTCTTGGAGCCGTTACTGACAGGAATCCCCTTATGCTAATTACTGAGTATCTAAAAGGGGGTGATCTTCATCAGTACCTCAAAGAAAAAGGTGCACTTAGTCCTTCAACAGCTATCAACTTTTCCATGGATATTGTCAGAGGAATGGCCTATCTTCACAATGAGCCAAATGTTATTATTCATAGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTCTAGTGCCGATCATTTAAAAGTTGGAGATTTTGGATTGAGTAAGCTTATCACGGTCCAGAGTTCTCATGATGTATACAAGATGACTGGTGAAACTGGGAGCTACCGCTACATGGCTCCTGAAGTTTTCAAACATCGGAGATATGATAAGAAGGTTGATGTGTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAGTTATGAACCTTATGATGGAGCAAAACGCGCTGCTGAGGGACACAGGCCACATTTTCGAGCAAAGGGTTATACCCCTGAATTGCAAGAATTAACGGAGCAGTGTTGGGCTGCTGACATGAATCGGAGACCGTCCTTCATAGAGATCCTGAAACGACTTGAAAAGATCAAGGAGAATTTGCCTGCAGATAATCACTGGCACTTGTTTGCTTCATAA 1266 0.4581 MSSGSSDSKEKEKEKQRVSRTSLILWHAHQNDAAAVRKLLQEDPSLVKARDYDNRTPLHVASLHGWIDVATCLIEFGADVNAQDRWKNTPLADAEGAKKNNVIELLRSHGGLSFGQNGSHFEPKPVPPPLPNKCDWEIDPSELDFTNSTRIGKGSFGEILKALWRGTPVAVKRILPSLSEDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTDRNPLMLITEYLKGGDLHQYLKEKGALSPSTAINFSMDIVRGMAYLHNEPNVIIHRDLKPRNVLLVNSSADHLKVGDFGLSKLITVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVYSFAMILYEMLEGEPPFASYEPYDGAKRAAEGHRPHFRAKGYTPELQELTEQCWAADMNRRPSFIEILKRLEKIKENLPADNHWHLFAS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01161 421 Gene3D Transferase(Phosphotransferase) domain 1 225 417 - -
Cca01g01161 421 Pfam Ankyrin repeats (3 copies) 21 84 IPR002110 GO:0005515
Cca01g01161 421 PRINTS Tyrosine kinase catalytic domain signature 220 233 IPR001245 GO:0004672|GO:0006468
Cca01g01161 421 PRINTS Tyrosine kinase catalytic domain signature 258 276 IPR001245 GO:0004672|GO:0006468
Cca01g01161 421 PRINTS Tyrosine kinase catalytic domain signature 374 396 IPR001245 GO:0004672|GO:0006468
Cca01g01161 421 Gene3D - 2 119 IPR036770 -
Cca01g01161 421 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 7 413 - -
Cca01g01161 421 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Cca01g01161 421 ProSitePatterns Protein kinases ATP-binding region signature. 151 172 IPR017441 GO:0005524
Cca01g01161 421 SUPERFAMILY Ankyrin repeat 24 111 IPR036770 -
Cca01g01161 421 SUPERFAMILY Protein kinase-like (PK-like) 143 415 IPR011009 -
Cca01g01161 421 Pfam Protein tyrosine and serine/threonine kinase 148 403 IPR001245 GO:0004672|GO:0006468
Cca01g01161 421 PIRSF ILK 1 421 - -
Cca01g01161 421 SMART ANK_2a 53 82 IPR002110 GO:0005515
Cca01g01161 421 Gene3D Phosphorylase Kinase; domain 1 130 224 - -
Cca01g01161 421 PANTHER SERINE/THREONINE-PROTEIN KINASE STY8-LIKE 7 413 - -
Cca01g01161 421 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Cca01g01161 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Cca01g01161 421 SMART serkin_6 145 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01161 421 ProSiteProfiles Protein kinase domain profile. 145 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01161 421 CDD STKc_MAP3K-like 151 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01161 Cca-Chr1 17835041 17842959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01161 2 421 MAP Kinase Kinase Kinase AT1G14000 82.857 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Cca01g01161 PK_Tyr_Ser-Thr 9.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01161 - - gmx:100793237 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01161 01 17835041 17842959 Cca01g01161 01 17835041 17842959 ECH