Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01160 ATGATTCTAAACGCCCGAGGACCACCACACCCGCCCCAACGCCACCTCCGCCTCCGCCGGCGACGGGGCCATAGAAAGAACACGGGCCTATGCGTCCTGTCCGGTTCGGGAACCGTCACCAATGTCACTCTCTGTCAACCCTCTGTCACCCCCGGCGCCACCGTCACTTTCCACGGCCGCTTTGATGTCCTCTCCCTCTCCGCCACGCTCCTCCTCCACGACTCGCCGGCAATCGTGGTCTCCGCCTTCGCCGTCTCGCTCGTCGGCCCATag 273 0.6484 MILNARGPPHPPQRHLRLRRRRGHRKNTGLCVLSGSGTVTNVTLCQPSVTPGATVTFHGRFDVLSLSATLLLHDSPAIVVSAFAVSLVGP 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01160 90 SUPERFAMILY AF0104/ALDC/Ptd012-like 27 78 - -
Cca01g01160 90 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 90 IPR014476 GO:0003680
Cca01g01160 90 Pfam Plants and Prokaryotes Conserved (PCC) domain 25 78 IPR005175 -
Cca01g01160 90 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 24 90 - -
Cca01g01160 90 Gene3D - 23 89 - -
Cca01g01160 90 ProSiteProfiles PPC domain profile profile. 1 90 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01160 Cca-Chr1 17831300 17831572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01160 25 90 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 56.944 4.80e-15 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01160 - - ccaj:109810856 111.309