Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01151 ATGCGTGTGCTCTCCAATGCTGCTATGCACCAAAACCAAAACCAAAGCCTCATGAATGGGAAGATGGTGAACAAGAGAAAAAGATGGGAGGGTACTGAAGGAGGGGAAAAGAAGAGAGAAGAAGGGAACATTGAATGGGAAAAACTAAGGGAAGAGGCTGCATCAATGACTGCTGCTATACTTGGAGCTAGAAGAGCCAAGAAACGTTACATTGGTGTGCGCCAAAGGCCCTCAGGAAGATGGGTGGCTGAAATCAAAGACACCATTCAGAACATTAGACTTTGGTTAGGCACTTATGACACTGCTGAAGATGCTGCTAGAGCTTATGATGAGGCAGCACGTTTGCTTCGTGGTCCCAACACTCGCACAAACTTCTTTCCTTCACAGTCTTCTCCTTCTGTTCCTGCTCTTCCTCCAAAGATTGCTAAACTCCTTCTTATTAGGCTCAAAGCTAGAAACATGACCTCTCCATGCATGGTTACCACTCCTTTTCCTAGTAACCATTATGAGCAACAAACCAAACCCGAAGTAGAACCAGAAAATTTTTATCACCAAAGAGAAGAACCTCATAATGAGAATATTTTAGATATGGTTGGACATGGGATTGTTGGAGAAAGTTATTATGGTGCTACTAGTTATAGTTCTTCTTCCATAACTACTTGTGACTATATTTGTGGTGCTAATGAAGCAAATTCTATCCAAGAGGGTGGCAGGGAGGATTTTGGATTCGGGTATGATTGTGCTAACAATGTTTATGATGGAAACAACCAGATTGTGAGTGGTAAGGGAGAGTTTGAAGACTGTGATTTTGGCATCACTGATTTTCAGTTTTTGGACACTGGTGGATCATTGAGTTACTCTTTTTCTCCATTTGAGATAGCAGAAGAGATGGTGGGACCGTTAGCGGAAGAGAAATATGATTTTGATGACTCACAGTTAGGTAGAGAAACTTTCAGGATGAAGTATGAAAGAAAATTCTCAGCTTGTCTTTACACCTTAATTGGGGTGTCTGAGTGTTTGAGGCTACAAGATGGACCAGAAAATGGAAAGGAATTGGAGAATTTTTGA 1068 0.4157 MRVLSNAAMHQNQNQSLMNGKMVNKRKRWEGTEGGEKKREEGNIEWEKLREEAASMTAAILGARRAKKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGPNTRTNFFPSQSSPSVPALPPKIAKLLLIRLKARNMTSPCMVTTPFPSNHYEQQTKPEVEPENFYHQREEPHNENILDMVGHGIVGESYYGATSYSSSSITTCDYICGANEANSIQEGGREDFGFGYDCANNVYDGNNQIVSGKGEFEDCDFGITDFQFLDTGGSLSYSFSPFEIAEEMVGPLAEEKYDFDDSQLGRETFRMKYERKFSACLYTLIGVSECLRLQDGPENGKELENF 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01151 355 Gene3D AP2/ERF domain 68 127 IPR036955 GO:0003700|GO:0006355
Cca01g01151 355 CDD AP2 68 125 IPR001471 GO:0003700|GO:0006355
Cca01g01151 355 SUPERFAMILY DNA-binding domain 69 126 IPR016177 GO:0003677
Cca01g01151 355 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Cca01g01151 355 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 353 - -
Cca01g01151 355 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 25 353 - -
Cca01g01151 355 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
Cca01g01151 355 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Cca01g01151 355 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Cca01g01151 355 Pfam AP2 domain 69 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01151 Cca-Chr1 17683363 17684430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01151 67 145 AP2-EREBP Transcription Factor Family AT5G19790 65.854 1.69e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca01g01151 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01151 K09286 - gmx:100793940 404.831