Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01139 ATGGTTGGCGGTGGAAATGGAGAGGGAGAGCAAGCACCACCGTGGCCAGCGGCGCGTCCCAGAAGCGTTCTCCGGCCACGCGCCTCCGTGGAGAGTGTTTTCAACGGTGGGCCTACCCTGGGGTATAGCCCCGGTCCCATGACTCTGCTTTCGAGCTTCTTTGGCGACGGCGATGAGTGTAAGTCGTTCTCGGAGCTCCTTGCCGGCGCCATGGTGGACCCCACTACACCTATGCCCACGTTCACCCCCGCTACCTTCGATTCACCATCTCAAGGGCACCTTGAAATGGCACACCAGCAGATGCTAGCACATGTCACATCATCGCAGGCTGTGCCAGCCTACACCAATGTGCAAATCCAATCTGAACATCCATTCTCTATCTCAGCAATGTCTGCTTCCTCATTCACACAAGTTCCTTCAGCTTCTTCCACTATTGCACAACAGCTGATACCACTCTCAATGCCAGATTCTAGGGTGACAGAATCCATTGACTTTTCTCACTCTGAACAAAAACTGCAGTCTTCTTCTGTGAATGCTGATAAGCCTAATGATGATGGCTACAACTGGAGGAAATATGGGCAAAAAAATGTAAAAGGTAGTGACTTCTCTAGGAGTTATTACAAATGCACACATCCAAATTGTCCTGTCAAGAAAAAGCTTGAGCGCTCTCTTGAGGGTCATGTAACTGCAATTATTTATAAAGGAGAGCACAATCACCAACGTCCTCATCCCAGTAGGATCACAAAAGAGACCCTCACTTCAAATGAAAATTCAGATGGATTGAAAGAAGAGATGAGTTCTCATTCAGTGCCTAAGATGGATCTAGAATCTTGTCAGGCAACAGCTGAACATGGGTCAGGAACAAGTGACAGTGAGGAAGTAGGTGATCATGAAACAGAAGTAGATGGAAAAAATGTTGAACCTGATCCCAAGAGGAGAAACACTGACGCCAGGCTCCAGGATCCAGCCTCTATACATAGATCTGTCGCAGAGCCTAGAATCATTGTGCAAACAATTAGTGAAGTGGATCTGTTAGATGATGGATATAGATGGCGCAAATATGGGCAGAAAGTTGTCAAAGGAAATCCATATCCAAGGAGCTATTACAAATGCACAACCCCTGGTTGCAATGTTAGGAAGCATGTTGAGAGGGCTTCAACGGATCCTAAAGCTGTCATAACAACATATGAAGGAAAGCATAATCATGATGTGCCAGCAGCCAAGACTAACAGCCACACACTTGCCAACAATAGTGCATCACAGCTAAAAGCACAAAATGCCATACCCGACGAGAAACATGGTTTCAGCAGCAGGGATGTTGGGGGCAATGAGCAGCGACCTGTGGCAAGTCTAAGATTGAAGGAAGAGCAGATAACATAG 1380 0.4717 MVGGGNGEGEQAPPWPAARPRSVLRPRASVESVFNGGPTLGYSPGPMTLLSSFFGDGDECKSFSELLAGAMVDPTTPMPTFTPATFDSPSQGHLEMAHQQMLAHVTSSQAVPAYTNVQIQSEHPFSISAMSASSFTQVPSASSTIAQQLIPLSMPDSRVTESIDFSHSEQKLQSSSVNADKPNDDGYNWRKYGQKNVKGSDFSRSYYKCTHPNCPVKKKLERSLEGHVTAIIYKGEHNHQRPHPSRITKETLTSNENSDGLKEEMSSHSVPKMDLESCQATAEHGSGTSDSEEVGDHETEVDGKNVEPDPKRRNTDARLQDPASIHRSVAEPRIIVQTISEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTLANNSASQLKAQNAIPDEKHGFSSRDVGGNEQRPVASLRLKEEQIT 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01139 459 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 458 IPR044810 GO:0003700
Cca01g01139 459 MobiDBLite consensus disorder prediction 426 459 - -
Cca01g01139 459 MobiDBLite consensus disorder prediction 289 320 - -
Cca01g01139 459 MobiDBLite consensus disorder prediction 233 325 - -
Cca01g01139 459 SMART WRKY_cls 183 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01139 459 SMART WRKY_cls 345 404 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01139 459 MobiDBLite consensus disorder prediction 1 23 - -
Cca01g01139 459 ProSiteProfiles WRKY domain profile. 340 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01139 459 Pfam WRKY DNA -binding domain 346 402 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01139 459 Pfam WRKY DNA -binding domain 184 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01139 459 SUPERFAMILY WRKY DNA-binding domain 337 405 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g01139 459 Gene3D WRKY domain 168 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g01139 459 Gene3D WRKY domain 330 406 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g01139 459 SUPERFAMILY WRKY DNA-binding domain 181 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca01g01139 459 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 16 458 - -
Cca01g01139 459 ProSiteProfiles WRKY domain profile. 178 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca01g01139 459 MobiDBLite consensus disorder prediction 161 182 - -
Cca01g01139 459 MobiDBLite consensus disorder prediction 161 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01139 Cca-Chr1 17440116 17443838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01139 17 459 WRKY Transcription Factor Family AT2G03340 49.231 5.03e-139 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca01g01139 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01139 - - gmx:100802109 668.692