Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01124 ATGGAGGGTAGGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTTCCTTGCGGGAAGTCTCTGGGGGGTCACATCAGGACCCACATGACTGAAGAAAGGAGCAATGCTGATGGTGACAACATGTTCACCAAGTTTGATGGTGTGAGGAAGAAGAGAGATTTATGGTGTGAAGATGTTGTTTATGGCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCTGGTGgtgccagtgccagtgccagtgccagtgccagCTGTGAACAACAGGAAGAGAGGTTCTGCAAAGAATGTGGGAAAGGCTTTCCATCTCTGAAGGCTCTCTGTGGCCACATGGCTTGTCACTCTGAGAAAGAGAAGAGAACCATCAAGTTTGAAGAGAGTGAGAAGAAGCTGAAATTGGTTATGGATAGTCACTCTGACACTGAGACTTGTGCTCCTTCGCATCCAAGGAGATCCAAGAGAATGAAGGTGAAGACCATTAACCTTTCCAATCACccttttgcttctccttcttcttctcttgttccttTGGAAAATGGCTCTTCACCTGTGTCTGAGGTGGAGCAAGAGCAGGAAGAGGTGGCTAGGTGTTTGATGCTGCTGTCTAGAGATTCTACCTTCAAGGGTCGTTTTGCTTCGGTTACTGAATCTTCTGATAACAACTCGGTTATTCTAGAAGCAAAATCCTCCTCTCTTGATACCGGGGTTGGTGTCACCAATGGTAATAACAACAACCACTTTGTCTCTAATAATGCTTGTGATCTCTTGGAGAAGAAGTTGCTTAAGGTTAAGGATGTCAAGTTAAAGTCTGCTGCTGAGTTTGGTGCTTCTGATAATTCAGGTTCTAGATGTTTCAGATATGGTTCTCAAACTAAAATGGTAAATTCTGATGTTTCAAATGATGAATTTAAGGGGTCCAAGATGGGGGACAAGTCTCGGTTTTTTGAGGACTATGATGTTGAATCAAGGAAGATAGTGAACAGAGGTAGAAGCAAATACACTGCTGCTACTGTGGTTAAGAAATTAGTGATGGAGAATTTGGATTATGATAGAACAGGTGGAACTACAAGGAAGTTTGATTCTCTTGGTCACAATCTAGTTGGAGTTTCTAGCAAGAAGATAGCAAATGGTTTTGACAATAAAGTATATGAGAATGACAGAAAGGATGGGAAGTATAAGTGTTCGGAGGGTGAAATGGACAATGGTTCTTATGATTCAATGGATGGCAGTGATGAAAATAGTTCAGAGAGTGATTCTTTTCCTACTCCCAGGTCTCACAATAGTAAGGCTCTGAATGGAAAGAAGAAGTTTAACAAGGCCAAGAAGAAGTTGAAGTCAAAGAAAACCAAGGATCACGAGTGTCCAATTTGCTACAGAATTTTCAAGTCAGGCCAAGCCTTGGGAGGTCACAAAAGATCACATTTCATCGGAGGTTCTGAGGAAAACACTTTAGTGATCAAACAAGCTGCTCCTGTTGTTCCTTGCCTCATTGATCTCAATCTACCTGCTCCTGTTGATGAATAG 1533 0.4038 MEGRKFVCKYCSKRFPCGKSLGGHIRTHMTEERSNADGDNMFTKFDGVRKKRDLWCEDVVYGLRENPKKTMRFVHSGGASASASASASCEQQEERFCKECGKGFPSLKALCGHMACHSEKEKRTIKFEESEKKLKLVMDSHSDTETCAPSHPRRSKRMKVKTINLSNHPFASPSSSLVPLENGSSPVSEVEQEQEEVARCLMLLSRDSTFKGRFASVTESSDNNSVILEAKSSSLDTGVGVTNGNNNNHFVSNNACDLLEKKLLKVKDVKLKSAAEFGASDNSGSRCFRYGSQTKMVNSDVSNDEFKGSKMGDKSRFFEDYDVESRKIVNRGRSKYTAATVVKKLVMENLDYDRTGGTTRKFDSLGHNLVGVSSKKIANGFDNKVYENDRKDGKYKCSEGEMDNGSYDSMDGSDENSSESDSFPTPRSHNSKALNGKKKFNKAKKKLKSKKTKDHECPICYRIFKSGQALGGHKRSHFIGGSEENTLVIKQAAPVVPCLIDLNLPAPVDE 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01124 510 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 510 - -
Cca01g01124 510 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Cca01g01124 510 SMART c2h2final6 6 28 IPR013087 -
Cca01g01124 510 SMART c2h2final6 455 477 IPR013087 -
Cca01g01124 510 SMART c2h2final6 95 117 IPR013087 -
Cca01g01124 510 ProSitePatterns Zinc finger C2H2 type domain signature. 457 477 IPR013087 -
Cca01g01124 510 SUPERFAMILY beta-beta-alpha zinc fingers 4 117 IPR036236 -
Cca01g01124 510 MobiDBLite consensus disorder prediction 432 450 - -
Cca01g01124 510 MobiDBLite consensus disorder prediction 392 450 - -
Cca01g01124 510 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Cca01g01124 510 Pfam C2H2-type zinc finger 6 30 - -
Cca01g01124 510 Pfam C2H2-type zinc finger 97 119 - -
Cca01g01124 510 Pfam C2H2-type zinc finger 455 477 - -
Cca01g01124 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 455 477 IPR013087 -
Cca01g01124 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Cca01g01124 510 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 510 - -
Cca01g01124 510 MobiDBLite consensus disorder prediction 409 431 - -
Cca01g01124 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01124 Cca-Chr1 17088196 17089728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01124 4 510 C2H2 Transcription Factor Family AT1G26610 43.689 4.23e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca01g01124 zf-C2H2_6 6.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01124 - - vun:114177115 621.313