Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01123 ATGGGGTATAAGAGAGGTTTTGAGGCTAATGAATATGAGGATCTTTCTTTGAACAAGGCAAAACGTTTTGAATGCAGCAATGAACTGGTTTCATTTGCTGATATTGTTACACCCAACAAGGCTTTTGAAAAGAATATTATTACAGGTGATGATGAAGATGGCTTTTACAATATTCAATGGTACGATCCACTTGAAACAGACACTGCTAAGGAATCTCTTTATATGGGTGACAAGAATGTTCAAACCAGTGGTCACTTCAGCTGTTATAGTGAAGAAGATACTGGTTCTGGGGCTACATCATTATCATCTGCTTCCTCAGGTTGTTCGGAACTTGAAATTCCACAGAAAGCATTTGTTCCTTTGGATGATGACGATTTGGCCTTTGATTGCTCACCTAGAAAAGCAGTTCCCATTGGACCAAATCATCAAGCCAACATTCCTATTTGGAGAGGTAAAGTGGATAATAAAATGTCAGAGTTAGGCATATATAATCATGACAGTCCCTCTTCTGGCTTAGTATCAGCTCATACTGTTGATGAAGATGAAGAGAGACTCATGGGGACTACTGTGCTCTCAATGCATGAATCTAGCTTTTATTCTTCTATTAGTAATGAGAGTGGACAAGGCAGGACAGAGTGTAACTGCATTGATCGTGGCTCCATCAGATGTGTTAGACAGCATGTTAGGGAAGCGCGTGAAATGTTAAGGGAGACTCTTGGGGACGAAAGATTTGTGAACTTGGGCTTTGGTGATATGGGAGAATATGTTTCACAGCAATGGACTGAAGAAGAAGAAGACATGTTCCATGAAGTTGTCTACAGCAATCCTGCATCTTTGGGTAGAAACTTTTGGAAGCATTTAGCAGCCACTTTCCAATCTCGAACTAATAAGGAAATTGTCAGCTACTATTTTAATGTTTTTATGCTGCGGAGGAGGGCTGCTCAGAACAGGTCCAGATTTTTGGATATTGATAGTGATGATGATGAATGCCATACGAGAAATGCTGGGATTTTTGGTTTTGAAAATTCCGATGATTCTGCCATTGAATCTCTTGGTGATCAAGATGGCCGTGTAGAAAACCAAgataattattctgatgaagatgatgaagatgataacagtgacgatgggactgaagataatgTTCTTGGTTTTACTGGATGTGATGTGGGAAACAGCTCTGAGATAGAGGGTGAGATTGTTCAAAGTTCATCAAATTGGAAGTTGAACTCACAAATTGAGACTTGGAGAAATCCTGATGAGCATGTTAATGGTACTTCAGGGATTCTGAACTACAATATGGATGACTCCTGTATGTCCTTTGAGTGTGATGCCAATATGGATGTGTCTTGCCATTCTCATGGATTGGGAGATGCTAGTCCTGGTTTGCATGCTAGGGGATTTAAATGTGATCAGAGTCCACGCATGCAGGGAAAACTTGATTTGTCCAGCAATGCGATGGAGCATGTTTATCTGATGGAGCCCTGTGTTACTAAAGATTGGTATCCTGGGTACTCAACATGTCCGACTTCGACTACAGATTTAGACTTCTTACCTACGTCCAATTTGATTGAAGAGTTTTTCGGTCATGGTACTCTTGATAAAAAGACCAGAAGTGACTGA 1623 0.3906 MGYKRGFEANEYEDLSLNKAKRFECSNELVSFADIVTPNKAFEKNIITGDDEDGFYNIQWYDPLETDTAKESLYMGDKNVQTSGHFSCYSEEDTGSGATSLSSASSGCSELEIPQKAFVPLDDDDLAFDCSPRKAVPIGPNHQANIPIWRGKVDNKMSELGIYNHDSPSSGLVSAHTVDEDEERLMGTTVLSMHESSFYSSISNESGQGRTECNCIDRGSIRCVRQHVREAREMLRETLGDERFVNLGFGDMGEYVSQQWTEEEEDMFHEVVYSNPASLGRNFWKHLAATFQSRTNKEIVSYYFNVFMLRRRAAQNRSRFLDIDSDDDECHTRNAGIFGFENSDDSAIESLGDQDGRVENQDNYSDEDDEDDNSDDGTEDNVLGFTGCDVGNSSEIEGEIVQSSSNWKLNSQIETWRNPDEHVNGTSGILNYNMDDSCMSFECDANMDVSCHSHGLGDASPGLHARGFKCDQSPRMQGKLDLSSNAMEHVYLMEPCVTKDWYPGYSTCPTSTTDLDFLPTSNLIEEFFGHGTLDKKTRSD 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01123 540 Pfam Myb-like DNA-binding domain 258 306 IPR001005 -
Cca01g01123 540 SUPERFAMILY Homeodomain-like 256 307 IPR009057 -
Cca01g01123 540 ProSiteProfiles Myb-like domain profile. 260 307 IPR001005 -
Cca01g01123 540 Gene3D - 260 321 - -
Cca01g01123 540 CDD SANT 260 307 IPR001005 -
Cca01g01123 540 PANTHER DNA BINDING PROTEIN 1 538 - -
Cca01g01123 540 MobiDBLite consensus disorder prediction 343 384 - -
Cca01g01123 540 MobiDBLite consensus disorder prediction 362 378 - -
Cca01g01123 540 PANTHER BNAA08G19780D PROTEIN 1 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01123 Cca-Chr1 17061021 17064525 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca01g01123 Myb_DNA-binding 5.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01123 - - gmx:100793577 879.011