Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01122 ATGAGATCGGGGTTTGATCTCTTTGAGTGCTGCTTCACTAGCACATCTTCTGACTCAATTCCAAAAGAGCACAGTTTGTTCAAGTGGCGAATCTTCCCCTACAAGAAACTTGCGAAATTCACAAATAATTTTGATCAATCACATTGTGTTGGAAAGAAGGGGTCTATCACTGAATATTACGGAAAACTTGAGGATGGACGTGAGATTACAGTCCAGTGCTTTAAGGAAGACAAGCGCTACATATTGCAACAGTTTATCAATGAAACTGTTATCCTAAATTACTTGCCTCACAAAAACATTGTGTCAATTTACGGCTGTGCTTTTCATCACAAGGAATCCCTGCTAGTGCACGAATACCAATCTAATGGAAATCTTGCTGCTTATCTTCAAAGTGAGAAGGCCGAAAACAACACATTACCTTGGCATACCAGATTGGATATAGCTATAGATATTGCAAATGCATTGAACTATCTTCACTGTTATGGCATCATCCACCGCAATGTGAAGTCCAGCAATATTCTCCTAGATGTGAACTTTTGTGCTAAAGTTGCTAACCTTCATTTATCACGGAAACTTCCAGATGGAGTTCCTGTCTATGCCACCCCTGTTACAAGTGATATGATTGGGACATGTGGGTATGTAGACCCAGAGTTGATAAATGGCCGGCTTAGTGTCAAAAATGATGTTTATAGCTTTGGGGTGGTGTTGTGTGAGCTGCTATCATCGGTGCTGGCAAAATACTTGGTTCTGAATGAAGAGGGTAATCTTGCTAACATTTTAAGCAGAAAAATTGAAAATCAAGCTTTGGTGGAGTTGTTTGATCCAAGACTTGGCTTCCATTCAAACCTTAAGACCAAGCAGATGATGATTGCTACAGCTGAGCTTGCACTTCTCTGCATGAAATGTCCACAAGAATTAAGGCCAAACATGGAACAAGTGCTAGAGATTCTCAATAGCATAAAGCCAGGGAGATACCAAACAAATTCTTACTCAACAAAAGCTTTAAAAATCTTCCAGTATGCTGAACTTGAAGAAGCTAGTAACAGTTTCGATAATTGCCTTGGAATGGGAGGGTATAGCAGCGTGTACTATGGAAAACTTAAAGATGGGCGAGAGGTTGCAATAAAATGTTTCCATGACGAGAACAAGAGAGAAGAGACCATTAAGCAATTCATGAAAGAAACCGAGATCTTAGGTCTCTTGCACCATCAAAATCTGGTTTCACTTTATGGCCGCACTTCTCGCCATAGCAACAAACACATGCTAGTGTACGAGTATATCTCTAATGGCACTCTTTCTAAACATCTTCATGAATCTTCCAGTGGTAAACTACCATGGCATACTAGGTTAAATATTGCCATTGAAACTGCAGCTGCATTGGTATATCTCCATGACTCAGGTTTCATCCACCGCGATGTAAAAGGGAGTAATATTCTGTTGGATGAAGATTTTACTGTTAAAGTTGCAGATTTTGGATTCTCACGGTCTCTTCCAGATCATGTTACTCATGTTTCAACTAATCCAGTAGGAACTCGTGCTTACATGGATCCTGACTACTTTGAATCTGGAAGGGTCAGTGACAAAAGTGATGTGTATGGATTTGGGGTGGTCTTGTTTGAACTCATATCATCCATCCCCCCAGGTTCAATGGAAGGCACAAATTATGTTACTCTTGCACATTTTGCAAAGAGAAAAATCTTAAACAAGGAATTAAAGGAGGTAGTGGATCCAAGTTTTTGGTTTGCTTCAGATAAAATCACGATGGAAATGGTAACAGCTGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCAAAGGAATTCAGACCATCCATGAAACAGGTGCTAGATACCCTAGAGGGCATAAGGAAGGGAACATGGGGATTCAACCAGATAACATAG 1902 0.4033 MRSGFDLFECCFTSTSSDSIPKEHSLFKWRIFPYKKLAKFTNNFDQSHCVGKKGSITEYYGKLEDGREITVQCFKEDKRYILQQFINETVILNYLPHKNIVSIYGCAFHHKESLLVHEYQSNGNLAAYLQSEKAENNTLPWHTRLDIAIDIANALNYLHCYGIIHRNVKSSNILLDVNFCAKVANLHLSRKLPDGVPVYATPVTSDMIGTCGYVDPELINGRLSVKNDVYSFGVVLCELLSSVLAKYLVLNEEGNLANILSRKIENQALVELFDPRLGFHSNLKTKQMMIATAELALLCMKCPQELRPNMEQVLEILNSIKPGRYQTNSYSTKALKIFQYAELEEASNSFDNCLGMGGYSSVYYGKLKDGREVAIKCFHDENKREETIKQFMKETEILGLLHHQNLVSLYGRTSRHSNKHMLVYEYISNGTLSKHLHESSSGKLPWHTRLNIAIETAAALVYLHDSGFIHRDVKGSNILLDEDFTVKVADFGFSRSLPDHVTHVSTNPVGTRAYMDPDYFESGRVSDKSDVYGFGVVLFELISSIPPGSMEGTNYVTLAHFAKRKILNKELKEVVDPSFWFASDKITMEMVTAVAELAFQCVQCPKEFRPSMKQVLDTLEGIRKGTWGFNQIT 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01122 633 SMART serkin_6 348 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01122 633 SMART serkin_6 44 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01122 633 ProSiteProfiles Protein kinase domain profile. 348 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01122 633 Pfam Protein tyrosine and serine/threonine kinase 350 618 IPR001245 GO:0004672|GO:0006468
Cca01g01122 633 Pfam Protein tyrosine and serine/threonine kinase 63 315 IPR001245 GO:0004672|GO:0006468
Cca01g01122 633 SUPERFAMILY Protein kinase-like (PK-like) 18 317 IPR011009 -
Cca01g01122 633 Gene3D Transferase(Phosphotransferase) domain 1 120 322 - -
Cca01g01122 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Cca01g01122 633 SUPERFAMILY Protein kinase-like (PK-like) 326 623 IPR011009 -
Cca01g01122 633 PANTHER TYROSINE KINASE FAMILY PROTEIN 28 633 - -
Cca01g01122 633 Gene3D Transferase(Phosphotransferase) domain 1 427 627 - -
Cca01g01122 633 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 28 633 IPR044652 -
Cca01g01122 633 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca01g01122 633 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Cca01g01122 633 Gene3D Phosphorylase Kinase; domain 1 323 426 - -
Cca01g01122 633 Gene3D Phosphorylase Kinase; domain 1 15 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01122 Cca-Chr1 17043429 17047656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01122 335 623 Receptor kinase-like Gene Family AT1G25390 52.203 1.69e-89 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Cca01g01122 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01122 - - gmx:100801413 1047.73