Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01093 ATGGAAGAAGTCTGTCTGAATAGTGAGCCACTTTTCAATGAAAACGATGAGGTTGATGTTGAGGGGAACTCTTCTGTAGCAGAACATGATCTTGAATCTTTAAACTCACAACCCACGAACTCTCCACTTCCATCTGTGGGTCTGGAGTTTGAGTCCTTTGAAGAAGTTTACAACTTCTACAATATCTATGCAAGGGAACAAGGCTTTGGCATCAGAGTGAGCAATTCATGGTTTAGATCAAAGAAAAAAGAGCGCTATAGGGCAAAACTTAGCTGCAGTAGTGCTGGTTTTAAGAAAAAAAGTGAAGCCAATAATCCAAGGCCAGAAACAAGAACTGGTTGTCCTGCAATGATAGTGATTAGAATGGTTGAGTCCAAGAGATGGAGAATAGTGGAAGTTGAGCTTCAGCACAACCATCAAGTGAGTCCACAGAGCAAACGGTTTTACAAGTCACACAAGAAAATGATCCTTGAAGCCAGCAAATCACAACCACCTCCAGAGCCCGTAACAGAAGTGCACACCATCAAGTTGTATCGAACAACTTTCATGGATATTGATTACAATGGTTACTCAAATTTTGAAGAAAGCCATGACACAAATTTTGATAAATTAAAATATTTGGAACTTAGAGAAGGGGATGCCAGTGCTATATACaattatttttgccgaatgaagttgaccgatccaaatttcttttacttgtttgatattgatgatggtgggcacctaaaaaatgttttctgggctgattccaggtcaagggttgcttctaattactttaatgacacagttacaatagacacaacttgttttgcaaacaaatatgagatccctttgatatcatttgttggtgtaaatcatcatggacattctgtactattgggttgtggcttccttggacatgaatcagtggattattttgtctggatattcaaggcatggcttaagtgtatgcttggtcgtcctccacatgttgttattactgatcagtgcaagccattgcaaattgcagttgctcaggtttttcctcatgctcatcattgttattctttgcagtatatcatgcagagagttccagaaaagttgggagggttacaaggatatgaagcaatcaagagacagctgtataatgctgtctacgagtcattaaagatagtcgagtttgaatcttcttggggtgatatgattaaatgtcatggactgggagataacaagtggcttcagacattgtatagagataggcacctatgggttcctgtttacctgaaagatgctttttttataggactgatcccaactaaagaaactgagggcctgactgcattttttgatggatatgtgcataaacacacatcctttaaggaatttcttgacaagtatgaCTTAGCTCTGCACAGGAAGCACTTGAAAGAAGCCATGGCGGATTTGGAGTCTAGAAATGCAAACTTTGAATTGAAAACGAGATGTAATTTTGAGGTCCAGCTTGCAAAGGTGTATACAAAAGAAATCTTTGAAAAGTTTCAATCTGAGGTTGAGGGCATGTACTCTTGCTTCAACACAAGACAGGTAAATGTCAATGGATCTATAATAACATACATTGTGAAAGAAAGAGTTGAAGCTGAGGGGAATGAGAAGGGAATTAAAAGTTTTGAAGTTTTATACGAAACTACAGAATTGGATATTCGTTGCATTTGCAGTTTGTTCAATTACAAAggatatctgtgcagacatgcattaaatgttctcaattataatggtgttgagggaatcccatctcggtacatcctgcaccgttggaagagggattttaagcaaACGTTTAATCAATTCCATGTCTCTCGTAATATCGATACTTACAACCCTGTGCTCTTGTATACTCATCTGTTTAACAATGCTCTTCCAGTGTTAGAAGTTGGGGCACAGTCACAAGAGCATTATATGGTTGCTTTAAAAGAACTGGAGGAGTTGTTAGAAAAGTTTGAAATAGAGGACAATAACAATGTAAACAAATAA 2013 0.2245 MEEVCLNSEPLFNENDEVDVEGNSSVAEHDLESLNSQPTNSPLPSVGLEFESFEEVYNFYNIYAREQGFGIRVSNSWFRSKKKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIVIRMVESKRWRIVEVELQHNHQVSPQSKRFYKSHKKMILEASKSQPPPEPVTEVHTIKLYRTTFMDIDYNGYSNFEESHDTNFDKLKYLELREGDASAIYNYFCRMKLTDPNFFYLFDIDDGGHLKNVFWADSRSRVASNYFNDTVTIDTTCFANKYEIPLISFVGVNHHGHSVLLGCGFLGHESVDYFVWIFKAWLKCMLGRPPHVVITDQCKPLQIAVAQVFPHAHHCYSLQYIMQRVPEKLGGLQGYEAIKRQLYNAVYESLKIVEFESSWGDMIKCHGLGDNKWLQTLYRDRHLWVPVYLKDAFFIGLIPTKETEGLTAFFDGYVHKHTSFKEFLDKYDLALHRKHLKEAMADLESRNANFELKTRCNFEVQLAKVYTKEIFEKFQSEVEGMYSCFNTRQVNVNGSIITYIVKERVEAEGNEKGIKSFEVLYETTELDIRCICSLFNYKGYLCRHALNVLNYNGVEGIPSRYILHRWKRDFKQTFNQFHVSRNIDTYNPVLLYTHLFNNALPVLEVGAQSQEHYMVALKELEELLEKFEIEDNNNVNK 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01093 670 Pfam FAR1 DNA-binding domain 58 142 IPR004330 -
Cca01g01093 670 Pfam MULE transposase domain 264 356 IPR018289 -
Cca01g01093 670 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6-LIKE ISOFORM X1 23 664 - -
Cca01g01093 670 SMART 26again6 561 588 IPR006564 GO:0008270
Cca01g01093 670 Coils Coil 643 670 - -
Cca01g01093 670 ProSiteProfiles Zinc finger SWIM-type profile. 550 586 IPR007527 GO:0008270
Cca01g01093 670 Coils Coil 466 486 - -
Cca01g01093 670 Pfam SWIM zinc finger 558 583 IPR007527 GO:0008270
Cca01g01093 670 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 23 664 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01093 Cca-Chr1 16478096 16483946 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca01g01093 MULE 8.7e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01093 K17604 - gmx:100811666 1276.92