Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01090 ATGCATGTATCGAATGTAGTTTGCATTTCGGATTCCTTACATGCATTAAATCTTATCCAACATCCACCTCTAGTGTGGCATGTGTATGCTACCATTATTGCTCGAATACGGGACTTTACTAGGGAGGATTGGCGGTTAGAGTTTAAGCATACTCTTCGGGAGGGCAATAGTTGTGCGAATTTTTTGGCTAAGCGAGAAGCAGCAGTAGATGAAGACCTGATCATTCTTGAAGCACCTTTAGCGAAACTTTCAATGCTTTTAGATGCTGATATTATGCGGcccaagcccaagcccaccccctcccctctccccaagcccCCCCTCCTCTCCGCCCCTCCCCCCGACGACGCCCTCCAGCCCGCCCTCGTCGGCGTCCCCTCCACCGTCCTCGAGGAGTACGACCCCGCCCGCCCCAACGACTACGACGACTACCGCCGCGACCGCAAGCGCCGGGCCCGCGAGGCCGAGATCCTGCGGGAGCTCGAGCGCCGCCGCCACGAGGAGGAGGAAGAAgagagggagagggagagggagagggaaagggagagAGATTTTGGGGATTCCAGGTTGAATGTTTCCGGTGAGGAGGCGTGGAGGAGGCGCGCCGCGATGAGTGGGGCGGTGCCGAGGTCGCCGTCGCCGCCGCCGGCGAATTCGGACGGTTTTAGCATTGGGAAGTCGGAGACGGGGGGCCTGGGCGTGGGGGCGGGGGGGCAGATGACGGCGGCGCAGAGGATGATGGCGAAGATGGGGTGGAAGGAGGGGCAGGGGTTGGGGAAGCAGGAGCAGGGGATTACCACTCCTTTGATGGCAAAGAAGACGGATAGACGAGCTGGGGTTATTGTCAATGCCAGTGATAATAGTAGCAAGAAAGTTAAGAGTGTTAGCTTCAATGGGGTGCCTACCAGGGTCTTGCTGCTTAGGAACATGGTGGGTCCCGGTGAGGTAGACGACGAGCTGGAAGATGAGGTAGGATCAGAATGTGCCAAGTATGGAACTGTAACCCGAGTTCTGATATTTGAGATAACAGAACCAAATTTCCCCAGTGATGAAGCAGTAAGAATCTTTGTGCAGTTTGAAAGATCCGAAGAAACAACTAAAGCGCTTATTGACCTCGATGGTCGATACTTTGGGGGTAGAGTGGTGCGTGCCTCATTTTATGATGAGGAGAAGTTTAGCAAGAATGAGTTAGCTCCAATGCCTGGAGAAATTCCTGGCTTTACCTGA 1227 0.5094 MHVSNVVCISDSLHALNLIQHPPLVWHVYATIIARIRDFTREDWRLEFKHTLREGNSCANFLAKREAAVDEDLIILEAPLAKLSMLLDADIMRPKPKPTPSPLPKPPLLSAPPPDDALQPALVGVPSTVLEEYDPARPNDYDDYRRDRKRRAREAEILRELERRRHEEEEEERERERERERERDFGDSRLNVSGEEAWRRRAAMSGAVPRSPSPPPANSDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNSSKKVKSVSFNGVPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPSDEAVRIFVQFERSEETTKALIDLDGRYFGGRVVRASFYDEEKFSKNELAPMPGEIPGFT 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01090 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 389 IPR000504 GO:0003723
Cca01g01090 408 SMART rrm2_1 304 385 IPR003954 GO:0003676
Cca01g01090 408 Coils Coil 151 183 - -
Cca01g01090 408 MobiDBLite consensus disorder prediction 95 114 - -
Cca01g01090 408 SMART G-patch_5 237 283 IPR000467 GO:0003676
Cca01g01090 408 MobiDBLite consensus disorder prediction 201 233 - -
Cca01g01090 408 SUPERFAMILY RNA-binding domain, RBD 305 392 IPR035979 GO:0003676
Cca01g01090 408 MobiDBLite consensus disorder prediction 93 143 - -
Cca01g01090 408 CDD RRM_UHM_SPF45 301 397 IPR034653 -
Cca01g01090 408 CDD RNase_H_like 1 64 IPR044730 -
Cca01g01090 408 Gene3D - 299 397 IPR012677 -
Cca01g01090 408 PANTHER SPLICING FACTOR 45 SPF45 120 399 IPR040052 GO:0045292
Cca01g01090 408 MobiDBLite consensus disorder prediction 164 184 - -
Cca01g01090 408 Pfam G-patch domain 242 281 IPR000467 GO:0003676
Cca01g01090 408 ProSiteProfiles G-patch domain profile. 239 285 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01090 Cca-Chr1 16436121 16444897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01090 245 287 C2H2 Transcription Factor Family AT5G26610 53.488 8.70e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01090 K12840 - gmx:100800998 396.741