Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01089 ATGGGGCCATCAAGTAACATCCTGTCAGAACTTCCTTCTCATGAAGTCCCTACCATTCTCATCTATGGGGACAAGAGCTGGGACTTGGTGTATAATGGACAAAGCAATAGGCAACAGAAGACTTTTGGTACCACAGGCTGGAAAAAGTTTGCTGTTGATACTTGTTTGAAGGTTGGAGACGCATGCATATTTGAGCTCATTCAAAGCAGTGACAAGAAAATCATCTTTCAAGTTCAAATTCTTAGAAGTGACATCCCATCCAAATTTCTTGAGAATGAAAAGCTCAGAGGGGTAAGACAGGAAAAAGTGAAAGAAACCAGAGGTGACCCACTTTTGTCTTGGAGCGTTGGCAAGATAGACAACTGTCTAGATGCATCAGCAGGTAATTATTCTTGCTTTAATCAAACATATCTTCATTTCGAAGATATGGACTTGTGGATATTGAGTCTGAAGAACCTGTTTCTTCAGGTTGAGAATCATCTTGAAGTGCTCTAA 495 0.404 MGPSSNILSELPSHEVPTILIYGDKSWDLVYNGQSNRQQKTFGTTGWKKFAVDTCLKVGDACIFELIQSSDKKIIFQVQILRSDIPSKFLENEKLRGVRQEKVKETRGDPLLSWSVGKIDNCLDASAGNYSCFNQTYLHFEDMDLWILSLKNLFLQVENHLEVL 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01089 164 ProSiteProfiles B3 DNA-binding domain profile. 1 84 IPR003340 GO:0003677
Cca01g01089 164 SUPERFAMILY DNA-binding pseudobarrel domain 18 83 IPR015300 -
Cca01g01089 164 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS04G0386900 8 94 - -
Cca01g01089 164 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 8 94 IPR044837 -
Cca01g01089 164 CDD B3_DNA 23 82 IPR003340 GO:0003677
Cca01g01089 164 Pfam B3 DNA binding domain 24 78 IPR003340 GO:0003677
Cca01g01089 164 Gene3D - 3 96 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01089 Cca-Chr1 16425278 16429439 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca01g01089 B3 1.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01089 - - gsj:114419817 139.813