Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01087 ATGGAGTTAGAGGTGAAGGTGGTGGGAGGCATAGACTCCTGTTTCGTATCCCTTCCCCTCTCTCTAATCCAAACGCTTCACTCCAAACGCTCGACACCGCTCCCTGAACTTCTCGCTCTCGAGCTTCGCTCTCCCACTCACCCTCCGCACACCTGGTTCGTCGCTTGGTCCGGCGCCACTTCCGCTTCTTCCGCCATAGAGGTTTCTCCTCTGTTTGCGGAGTGCGTTTCATTGCCGAATCACGCTAGCGTTCAAGTCAGAGCTGCTCCCAATGTGCCGCACGCTTCTCTGGTCACGATAGAGCCGCACACGGAAGATGACTGGGAAATCTTGGAGCTCAACGCCGACCAAGCCGAGGCTAAAATCCTCAGCCAGGTCAGGATTGTTCATGAAGGGATGAGGTTTCCTTTGTGGTTGCATGGTCATACTGTCATTACATTCCAAGTGGCTTCTGTTATTCCGAAGAATGCGGTGGTACAACTCATGCCAGGAACTGAAGTTGCTGTTGCTCCAAAAAGACGCAAAAGAATTTTGGATCCAGCAGGAGATTCACATCTAGACTCTTCTAATAAAGAGAATACTGTTAAGATGCTGCTTCGCTTACAAGATCCAGATGGATTATGCAGTATCAGTACTCATCTCAAAGGAGATGAGTTTCGGCTTACTTCTATTGCTTTTGTTCACCCAGAAACAGCCAAACAATATTCATTCAACATGCTTCAATCTGTTTTGATAGTACCCAGAGTATCCAAAGAGAACGTTAATGTTTCCAGAACCAATACAAAAGCCAAAAGTGGTTCAGCTACGAATGAAGTTGAGAATGGATATATCGACAAGACAGAATATCGACAAACAATTGTTCAGCTGTTGATTTCAGAATCTGTGGCTAAAGGACATGTTATGGTAGCCAAGTCTCTTCGCCTTTATTTGGGAGCTAGCCTACATTCATGGGTTTATTTGAAGTCATGTGATATCATTATGGATAAAAGTATTCCTTCTACCTTTCTTTTTCCTTGCCAATTCAAACTGTCAAGGCAGGAGAATGATGTTGAGAAAGATGGTCTAGAAGTTTTTCATGGTCACAAGAATCACATTGATGAAAAATTGCATGCAAAAGCTACTTCAGGTGTCTCTGGGGATGCTATAGATTGGTCAATCCAAAATGAAGTAGTAGCAGCTCTCTCTGATGAATCCAATTACAAAGGTGAGGAAGAGGCTACAAATCTGTCTCAGAATCGAAAGGGATTACAGAGTCTTGTACGATTATGGTATATCACACAACTTAAAGCAATTACTTCCATTACGGGTATGGAGGTTAGTTCATTGGTTATGGGAAACAATACCTTGCTTCACTTTGAATTAAGCTGTTACAAGCTTAGGAGTAATGGGAAGGTTCAGCTAGCCTATAATTCTTCAGTGAACAGTGGCAAGGCGCCTGAAATGTTGTTTCTATTGACCTTTGGTGAAGAATATCTGCATCATGGGAAACTTAATGCATATGAAGTTGCTCTAGGTGGAAGAGTCAATAACATCAATATTTTGGACCTGAAGCTTTTTGAAAGGATAAAATTATGTGATCCTTTGTCTATTCATTGTATAGAAGAGAGAGCCTCTCAAGACCACATTAGTTCAAATGTATCTTCCCTTGGCTGGATGGAGAAAACAGCTGATGATGTTATCAATAGGATGTTGATATTGTTATGTTCTGCATCTGGTTTGTGGTTTGGCTCACACAACTTACCACTCCCTGGACACGTTCTGATATATGGACCTCCTGGCTCTGGGAAAACTATATTAGCAAGAACTGTGGCAAAATCCCTTGAAAATCGTGAGGACATCTTAGCACACATAATTTTTGTTTCCTGTTCAAAACTTGCCTTGGAGAAGGTCCCAATTATTCGCCAAGAACTTGCAAACCATGTGACAGAAGCGTTATACCATGCTCCTTCTGTTGTCATCTTTGATGATCTTGATAGCATAATTTCTGCCCCCGACTCTGAAGGATCTCAGCCTTCAATATCTGTTGCTGGACTCACAGATTTTCTTGTTGACATCATGGATGAATATGGTGAGAAGAGGCGAAAATCATGTGGATTTGGACCAATAGCCTTCATAGCTTCCATACAATCCCTAGAGAAGATCCCACAACCTTTGAGCTCTTCAGGACGGTTTGACTTTCACATAAAGCTGCCTGCTCCTGCAGCTTCTGAGCGCAAGGCTATGTTGAAGCATGAAATACAGAGGCGTCACTTGCGATGCGATGATGACATCGTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTAGTTGACAGAACTGTCCATGCTGCTGTTCGCCGTTTTCTGCCATCTAATGCTTCCATTTATGAGCATGAGAGTCCTTCTTTACTAAGGGAGGATTTCTCTCAGGCAATGCTTGATTTTCTTCCAGTTGCAATGCGTGATGTCACAAAATCAGCATCTGATGATGGCCGTTCTGGATGGGATGATGTGGGTGGCCTTGTTGATATTCGAAATGCTATTAAGGAGATGATAGAGTTACCATCAAAGTTCCCGAAAACTTTTGCTCAAGCACCTTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTtggtgctgctgctgctgcttctTCACTTCGATTTATATCAGTGAAAGGGCCAGAACTGTTAAACAAGTATATTGGTGCTTCTGAACAGGCTGTTAGGGATATATTCTCTAAAGCAGCTGCTGCAGCGCCATGTCTACTTTTTTTTGATGAATTTGATTCTATTGCCCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGTGTTGTTAATCAATTTCTGACTGAGTTAGATGGTGTTGAGATTTTAACTGGTGTATTTGTGTTTGCTGCAACCAGTAGACCAGATTTACTTGATGCAGCGCTGTTGAGACCTGGTAGGTTAGATCGTCTTCTATTCTGTGACTTTCCATCTTGGCATGAGAGATTGGAAATTCTTACAGTACTTTCTAGGAAGTTACCAATGGCTGATGATATTGATTTGGCTACAATAGCTAATATGACAGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCGCAGCTTGCAGCAGTTCATGATGTTCTAGACAATGTGGATGCCTCTAGGCCAGAAAAAACACCAGTTATTACTGATGCTCTTCTGAAGTTCACAACGTCCAAGGCTAGACCATCTGTCTCAGAACAAGAGAAGATAAGACTTTACAGTATATATCACCAGTTCTTGGATTCAAAGAGATCTGTTGCTGCTCAGTCGAGGGATTCAAAAGGCAAGAGGGCAACTCTGGCTTGA 3381 0.4241 MELEVKVVGGIDSCFVSLPLSLIQTLHSKRSTPLPELLALELRSPTHPPHTWFVAWSGATSASSAIEVSPLFAECVSLPNHASVQVRAAPNVPHASLVTIEPHTEDDWEILELNADQAEAKILSQVRIVHEGMRFPLWLHGHTVITFQVASVIPKNAVVQLMPGTEVAVAPKRRKRILDPAGDSHLDSSNKENTVKMLLRLQDPDGLCSISTHLKGDEFRLTSIAFVHPETAKQYSFNMLQSVLIVPRVSKENVNVSRTNTKAKSGSATNEVENGYIDKTEYRQTIVQLLISESVAKGHVMVAKSLRLYLGASLHSWVYLKSCDIIMDKSIPSTFLFPCQFKLSRQENDVEKDGLEVFHGHKNHIDEKLHAKATSGVSGDAIDWSIQNEVVAALSDESNYKGEEEATNLSQNRKGLQSLVRLWYITQLKAITSITGMEVSSLVMGNNTLLHFELSCYKLRSNGKVQLAYNSSVNSGKAPEMLFLLTFGEEYLHHGKLNAYEVALGGRVNNINILDLKLFERIKLCDPLSIHCIEERASQDHISSNVSSLGWMEKTADDVINRMLILLCSASGLWFGSHNLPLPGHVLIYGPPGSGKTILARTVAKSLENREDILAHIIFVSCSKLALEKVPIIRQELANHVTEALYHAPSVVIFDDLDSIISAPDSEGSQPSISVAGLTDFLVDIMDEYGEKRRKSCGFGPIAFIASIQSLEKIPQPLSSSGRFDFHIKLPAPAASERKAMLKHEIQRRHLRCDDDIVLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPSNASIYEHESPSLLREDFSQAMLDFLPVAMRDVTKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMADDIDLATIANMTEGFSGADLQALLSDAQLAAVHDVLDNVDASRPEKTPVITDALLKFTTSKARPSVSEQEKIRLYSIYHQFLDSKRSVAAQSRDSKGKRATLA 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01087 1126 SUPERFAMILY ADC-like 10 88 IPR009010 -
Cca01g01087 1126 Pfam Peroxisome biogenesis factor 1, N-terminal 98 171 IPR015342 GO:0005524|GO:0005777|GO:0007031
Cca01g01087 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1091 IPR027417 -
Cca01g01087 1126 CDD AAA 580 731 - -
Cca01g01087 1126 Pfam AAA+ lid domain 1025 1063 IPR041569 -
Cca01g01087 1126 Gene3D - 1004 1083 - -
Cca01g01087 1126 Pfam ATPase family associated with various cellular activities (AAA) 586 731 IPR003959 GO:0005524|GO:0016887
Cca01g01087 1126 Pfam ATPase family associated with various cellular activities (AAA) 873 1000 IPR003959 GO:0005524|GO:0016887
Cca01g01087 1126 SUPERFAMILY Cdc48 domain 2-like 93 171 IPR029067 -
Cca01g01087 1126 Gene3D - 93 172 - -
Cca01g01087 1126 Gene3D - 532 733 IPR027417 -
Cca01g01087 1126 PANTHER - 3 1123 - -
Cca01g01087 1126 Gene3D - 834 1093 IPR027417 -
Cca01g01087 1126 ProSitePatterns AAA-protein family signature. 973 991 IPR003960 GO:0005524|GO:0016887
Cca01g01087 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 808 IPR027417 -
Cca01g01087 1126 PANTHER AAA-FAMILY ATPASE 3 1123 - -
Cca01g01087 1126 CDD AAA 839 1002 - -
Cca01g01087 1126 Gene3D - 734 813 - -
Cca01g01087 1126 SMART AAA_5 582 734 IPR003593 -
Cca01g01087 1126 SMART AAA_5 869 1005 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01087 Cca-Chr1 16376922 16404065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01087 586 794 Calmodulin-binding Proteins AT3G56690 29.630 1.44e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01087 K13338 - gmx:100803882 2005.33