Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01085 ATGAAAGATGGTGGTAGGAAACAGGGTGCAGCCTCACCCTGTGCTGCATGCAAGCTGCTTCGAAGAAGGTGCGCTCAGGACTGTGTTTTTGCTCCTTATTTTCCTGCGGATGAGCCTCACAAGTTCGCCAATGTGCATAAAGTCTTTGGTGCCAGCAATGTCAACAAGATGCTTCAGGACTTACCAGAGCATCAGAGAGGAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGAGTGAGAGACCCTGTTTATGGCTGTGTTGGGGCCATTTCTTCTCTTCAGCAACAGATTGATCTCTTACAGACCCAATTGGCTGTGGCCCAGGCTGAGGCTGTGCACCTTAGGGTTCGACAAACTGCATCCTTCTGGAACCCAGGGCCCACTAGCCCAACCAATAGTGGCTCTCCATCATCCAAGATCATTGAATCACAGCCCAAGCCCATTTTTGATATGGACATGGTGGTGGACCAGACCACCTATGGTGATTCAATCTGGTGA 504 0.5 MKDGGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAVAQAEAVHLRVRQTASFWNPGPTSPTNSGSPSSKIIESQPKPIFDMDMVVDQTTYGDSIW 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01085 167 Coils Coil 92 112 - -
Cca01g01085 167 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Cca01g01085 167 MobiDBLite consensus disorder prediction 124 144 - -
Cca01g01085 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 161 - -
Cca01g01085 167 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cca01g01085 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01085 Cca-Chr1 16338735 16342943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01085 1 167 AS2 family AT1G31320 71.176 7.41e-76 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca01g01085 LOB 4.8e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01085 - - gmx:100306560 286.189