Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01080 ATGGCGGTTCGAAAATGCAACCTCCGTGTGAACCACTTCGCTGTTAAGTTCAATCCACAGAGCGTAATAATGCACTATCATGTGGATGTGAAGGTCAATGCTCCTCCTAAGAACAATCGCACTCAGAAGATTTCCAAGTCGGATTTGTCGTTGATTCGGAAGAAGCTGTTTGAGGATCCCTCGCTTCCGTCACAGAAGACGTCCTACGACGGTGAGAAGAGCATCTTCAGCGCGGTGCCGTTGCCGGAAGAAACCTTTGCCGTGGACCTAGAGGACGAGAGGAGTGTTTCGTATTTGGTCACTCTGACGCTGGTCAACAGGCTTGAGCTTCGGAAGTTGAGGGATTACCTTAGTGGAAGTGTGCTTTCGATTCCTAGAGATATTTTGCAGGGTTTGGATTTGGTGGTGAAGGAGAATCCCACGAATCAGTGTACTCCCGTGGGGCGCTGCTTCTTTCCCATAGACCCTCCCTTGAGGAAGAAGGATCTCGGACGAGGGATAGTTGCAATAGGAGGCTTTCAACAGAGTCTTAAACCCACTTCTCAGGGCTTGTCCCTGTGCATTGACTATTCCGTTTTGTCATTTCGGGAGAAAATGTCGGTGTTGGATTTTCTACATTATCAAATTCAAGACTTTGATTTGAATGATTTTGGGCGATTCAAGAGACAGGTTGAGCATGTACTTGTTGGGTTGAAAGTTAATGTTACCCACCGGAGGACGAAGCAAAAGTACACTATTGCCAAGTTGACACCCAAAACTACAAGGTACACCACATTTCCTATTTATGACTCTGAGGGCCGAAGAACAAGTGAAGCTGGTCTTCTTAATTACTTCCAGGAGAGATATCATGTGGACATTCAATTAAAGGACATTCCTGCCTTGGATTTTGGGGGCAACAAGACTAATTATGTTCCTATGGAGTTGTGTGTCTTGGTTCAGGGTCAAAGATATCCCAAAGAGAATTTGGACAGATATGCTGCCAAGGATTTGAAAGACATGTCAGTGGTTTCCCCAAGAGAGAGGCGAGATACAATCCAGACTATGGTGGAGTCAAATGAAGGACCATGCGGAGGTAATATTATTCAAAATTTTGGAATGAGTGTCAACACTTCAATGACGAACGTGACAGGACGTGTAATTCAGCCCCCACAATTGAAGTTAAGTACTCCAAATGGTGAGATTGTTAGTATGACGCTGGAAGTTGACAAATGTCAGTGGAATCTAGTGGGAAGGTCAATGGTGGAAGGAAAGCCAGTTACTCACTGGGGCATTCTTGATTTTACCAGCAAGGAGTCTGGTCGGTACAGATTAAAACACATACAAATTGTTAACAAGCTTATTGAAAAATACAGTAAATTGGGCATTGTCATGAAGGAGCCAGTTGTGCGTAAACAAGCTAGTATGTGGAATCTTGATGATTATCGTCAGCTGTATAGTTTACTGGAAAATATTGATGATAATCAAAAAAAAGATTGCCAACGGCTCCAGTTTCTTCTTTGTGTGATGTCCAGCAAACATCAGGGTTACAAGTGCCTCAAATGGATTGCTGAGACCAAGATTGGCATAGTGACACAATGCTGCTTGTCTGTTAATGCTAATGAAGGGAAGGACCAATATTTTACAAATCTTGCCCTCAAAATTAATGCCAAAATTGGAGGAAGTAATGTAGAGCTCATCAACAGGCTCCCACACTTTGAAGGTGAAGGGCATGTTATGTTCATAGGAGCTGATGTCAATCATCCAGCTTCCCGCGACACCAACAGTCCATCAATTGCTGCAGTGGTTGCCACTGTCAACTGGCCTGCTGCGAATCGTTATGCAGCTCGTGTTTGTGCTCAAGGTCATCGGGTTGAGAAAATTTTGAATTTTGGGAGAATTTGCCATGAACTTGTTTCATATTATGATAGGCTGAACAAAGTCAGACCTGAAAAAATTGTTATCTTTCGTGATGGCGTTAGTGAAAGCCAATTTCACATGGTCCTCACGGAGGAGTTGCAAGATTTGAAAGCAGTGTTTGGTGAGGCAAATTATTTCCCAAGTATCACTCTTATTGTCGCTCAAAAGCGACATCAAACTCGATTTTTTCCCATGAATCCGAGGGACGGGATTCCTAATGGCAATGTGTTCCCTGGAACAGTTGTGGACACAAAAGTGGTACACCCTTTCGAATTTGACTTTTACCTTTGTAGTCACTATGGAAGCCTGGGTACAAGCAAGCCAACGCACTATCATGTCTTGTGGGACGAGCAAAACTTCACCTCTGATGCGTTGCAGAAACTCATATATGACATGTGCTTTACCTTCGCTAGGTGCACTAAGCCTGTATCTTTAGTCCCACCAGTGTACTACGCTGATCTTACTGCATATAGGGGACGGTTATACTATGAAGCAATGAATCAAATGCAATCTCCTGGTTCAGCTGTATCTTCATCATCGGCGGCTACTTGTACGTCAGTTTCTTCAGCAGGCTCAAGCTTAAATGATCCGGGATTTTCCAAGTTGCATGCTGATGTGGAAAACATAATGTTCTTCATTTGA 2538 0.4366 MAVRKCNLRVNHFAVKFNPQSVIMHYHVDVKVNAPPKNNRTQKISKSDLSLIRKKLFEDPSLPSQKTSYDGEKSIFSAVPLPEETFAVDLEDERSVSYLVTLTLVNRLELRKLRDYLSGSVLSIPRDILQGLDLVVKENPTNQCTPVGRCFFPIDPPLRKKDLGRGIVAIGGFQQSLKPTSQGLSLCIDYSVLSFREKMSVLDFLHYQIQDFDLNDFGRFKRQVEHVLVGLKVNVTHRRTKQKYTIAKLTPKTTRYTTFPIYDSEGRRTSEAGLLNYFQERYHVDIQLKDIPALDFGGNKTNYVPMELCVLVQGQRYPKENLDRYAAKDLKDMSVVSPRERRDTIQTMVESNEGPCGGNIIQNFGMSVNTSMTNVTGRVIQPPQLKLSTPNGEIVSMTLEVDKCQWNLVGRSMVEGKPVTHWGILDFTSKESGRYRLKHIQIVNKLIEKYSKLGIVMKEPVVRKQASMWNLDDYRQLYSLLENIDDNQKKDCQRLQFLLCVMSSKHQGYKCLKWIAETKIGIVTQCCLSVNANEGKDQYFTNLALKINAKIGGSNVELINRLPHFEGEGHVMFIGADVNHPASRDTNSPSIAAVVATVNWPAANRYAARVCAQGHRVEKILNFGRICHELVSYYDRLNKVRPEKIVIFRDGVSESQFHMVLTEELQDLKAVFGEANYFPSITLIVAQKRHQTRFFPMNPRDGIPNGNVFPGTVVDTKVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEQNFTSDALQKLIYDMCFTFARCTKPVSLVPPVYYADLTAYRGRLYYEAMNQMQSPGSAVSSSSAATCTSVSSAGSSLNDPGFSKLHADVENIMFFI 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01080 845 Pfam Piwi domain 498 795 IPR003165 GO:0003676
Cca01g01080 845 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 1 844 - -
Cca01g01080 845 SUPERFAMILY Ribonuclease H-like 482 797 IPR012337 -
Cca01g01080 845 Pfam Argonaute linker 2 domain 340 386 IPR032472 -
Cca01g01080 845 CDD Piwi_ago-like 359 795 IPR045246 -
Cca01g01080 845 CDD PAZ_argonaute_like 199 312 - -
Cca01g01080 845 Gene3D - 379 559 - -
Cca01g01080 845 ProSiteProfiles PAZ domain profile. 230 313 IPR003100 GO:0005515
Cca01g01080 845 SMART PAZ_2_a_3 199 345 IPR003100 GO:0005515
Cca01g01080 845 Pfam N-terminal domain of argonaute 4 135 IPR032474 -
Cca01g01080 845 Gene3D paz domain 194 317 - -
Cca01g01080 845 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 844 - -
Cca01g01080 845 Pfam Argonaute linker 1 domain 146 196 IPR014811 -
Cca01g01080 845 Gene3D - 567 845 IPR036397 GO:0003676
Cca01g01080 845 ProSiteProfiles Piwi domain profile. 497 796 IPR003165 GO:0003676
Cca01g01080 845 Pfam PAZ domain 210 323 IPR003100 GO:0005515
Cca01g01080 845 SMART Piwi_a_2 497 796 IPR003165 GO:0003676
Cca01g01080 845 SUPERFAMILY PAZ domain 195 351 IPR036085 GO:0005515
Cca01g01080 845 SMART DUF1785_2 145 198 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01080 Cca-Chr1 16178532 16182909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01080 4 844 Eukaryotic Initiation Factors Gene Family AT1G48410 36.211 2.49e-157 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01080 K11593 - gmx:100805250 1372.07