Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01072 ATGTCTGAGAAAATGGAGGGGAATGGGAAAAGCGAGCAAATCGTGGACGTTGGATCGGTGGTGGAAGCCGTTTCCGCTGACGACGGTGACGCTCCTCTCTACAGCCTCGAAAGTCTTTGCATGCGTTGCGGTGAAAACGGGATTACAAGATTTTTATTGACTTTAATTCCTCACTTTAGAAAGATTTTGTTATCTGCTTTTGAATGTCCTCACTGTGGTGAGAGGAACAATGAAGTACAGTTTGCTGGTGAAATTCAACCGCGTGGTTGTTGTTTCACTCTAGAGATCCCATCAGCCGAACAGAAGATGCTCAATCGACAAGTGGTAAAGTCAGAATCTGCTACCATTAAGATACCTGAACTGGACTTTGAGATTCCTCCAGAGGCTCAGCGTGGTAGTCTGTCAACGGTGGAAGGGATACTAATGAGAGCAGCTGATGAACTTCAGGCCCTTCAAGAAGAACGCAAAAAAGTGACTCCAGAGACAGCTGAAGCAATTGATCAGTTCTTGGTGAAACTGCGAGCCTGTGCAACAGGGGAATCAGCCTTCACTTTTATTCTTGATGATCCTGCTGGAAACAGCTTCATTGAAAACCCGTTTGCTCCATCATCTGATCCATCTCTAACTATCAAGTTTTATGAGAGAACACCTGAGCAGCAAGCAACATTGGGATACCTTGTCGAATCCTCACAGATTGAAGGAACTCATGAAGCGCCAGAAGTGGGACAAGCCGTGACTACTGATCAAGTGAGGAGAGAACCACATGGGTCAATAGGGGCAACAGCTGGTCATCGAGCCATTGCACAGAGTAATAGTTCAGAAATTGCTGAATCCTTATTTCGGTATACTGCACCAGAAGAGGTGATGACCTTTCCATCTTCTTGTGGCGCCTGTGCCACTAAATGCGAGACTCGAATGTTTGTCACCAATATTCCTTACTTCCAAGAAGTAATCGTTATGGCATCCACATGTGATGCCTGTGGTTACCGCAACTCTGAGTTGAAACCTGGTGGGCGAATTCCTGAAAAAGGAAAAAGAATTACTCTTTATGTGAAGAATGTTAATGACCTGAGCCGTGATGTAATAAAGTCTGATACTGCAAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGTGGCACCCTTGGAGGAATTGTTACAACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAGCCTTGAGAGGGTCCATGGCTTTACTTTTGGAGATAGTCTTGATGAACATAGGAAAAGCAAGTGGATAGACTTTAAAGCAAGGCTAAACAAGCTTCTTAGTTTGGAAGAAGCTTGGACGCTAATTCTTGATGATGCATTAGCCAATTCTTTTGTAGCACCTGCAACTGATGATCTGAAAAACGACAATCAATTAGCATTTGAGGAATATGAGAGATCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATGGACACCTCTTCTGCCGATGTTGCTTATGAATCAACAAATACTGCCAAAACTGAGTGA 1509 0.4334 MSEKMEGNGKSEQIVDVGSVVEAVSADDGDAPLYSLESLCMRCGENGITRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCFTLEIPSAEQKMLNRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILMRAADELQALQEERKKVTPETAEAIDQFLVKLRACATGESAFTFILDDPAGNSFIENPFAPSSDPSLTIKFYERTPEQQATLGYLVESSQIEGTHEAPEVGQAVTTDQVRREPHGSIGATAGHRAIAQSNSSEIAESLFRYTAPEEVMTFPSSCGACATKCETRMFVTNIPYFQEVIVMASTCDACGYRNSELKPGGRIPEKGKRITLYVKNVNDLSRDVIKSDTASVKVPELDLELASGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDEHRKSKWIDFKARLNKLLSLEEAWTLILDDALANSFVAPATDDLKNDNQLAFEEYERSWEQNEELGLNDMDTSSADVAYESTNTAKTE 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01072 502 Gene3D ZPR1, A/B domain 339 481 IPR042451 -
Cca01g01072 502 Gene3D ZPR1, A/B domain 84 225 IPR042451 -
Cca01g01072 502 PANTHER ZINC FINGER PROTEIN ZPR1 5 495 IPR040141 -
Cca01g01072 502 MobiDBLite consensus disorder prediction 479 502 - -
Cca01g01072 502 Gene3D ZPR1, zinc finger domain 30 83 IPR042452 -
Cca01g01072 502 Gene3D ZPR1, zinc finger domain 283 338 IPR042452 -
Cca01g01072 502 Coils Coil 134 154 - -
Cca01g01072 502 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 5 495 - -
Cca01g01072 502 Pfam ZPR1 zinc-finger domain 293 451 IPR004457 GO:0008270
Cca01g01072 502 Pfam ZPR1 zinc-finger domain 38 197 IPR004457 GO:0008270
Cca01g01072 502 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 40 221 IPR004457 GO:0008270
Cca01g01072 502 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 294 485 IPR004457 GO:0008270
Cca01g01072 502 SMART zpr1 38 198 IPR004457 GO:0008270
Cca01g01072 502 SMART zpr1 293 453 IPR004457 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01072 8 500 C2H2 Transcription Factor Family AT5G22480 76.258 0.0 784