Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01060 ATGGTTGTTGTCAGTAGCAAAAGCAGCACAAAACTTGTACAATCATCATGTTCGTGTCCACCTAGAATGGTTAAAGTTTCAGCTGAGGCTGCTTCTTCTTCTTCTtcttctttttcttccgctaaaaaacatgatgttttcatcagctttagaggtgaggacacgcgcaagagtttcacaagccatctttatgctgcttttcagcacaacaaaatccaaaccttcatagattacaagcttcccaaagggggtgagatctctcccataattctcaaagccattgaacactccaacctatctgtggttgttctctccaagcactatgcttcctccacttggtgcttgcgtgaactcgccaaaataatcgaacacaagaaacgtggtggacacattgtgatacctgtgttcttcaaggttgatccttcccatgtaaggaagcagactggtacttatggaaaagcctttgaaaaatatgagagagatggcaaacacagcatggccatgttgcagaaatggaaagctgctctcacagaagttgccaatttagttgggtggaacatgcggaattacaggacggaatatgaactcattgaggaaattgtcaaagttgttatgcaaaaactgaatcatatatatcccacagaagtaaaagaaagactggttggaattgatcaaaatcttgctcctattgaatcgttattgaaaatcaggtcaaaagaagttcgcataattggaatttggggcatgggaggattaggtaagacaaccattgccaatgctttatttgccaaattatcatctcaatatgaaggtagttgcttcttgacaaatgtaagggaagaatttgataagcgaggacttggttatttacgtgataaacttttttctgaggtactagaggatgtgaatctccatattagcacccctagagtaagatccacttttgttatgaggaggcttagacaaaagaaggttttgattgtgcttgatgatgtggacaatccgaagaagctagaatatcttgctgcacaacatgattgcttgggatcaggtagtagagtcattgtcactaccagagacaagcatgtacttagcaaaggggtagatgaaatatatgaggtcaagggattgtcccttcatcatgcagttaacctttttagtttaaatgcctttgggaaaacctatccgaaaatgggctttgaaatgctatctaaacaggtggttgatcatgcaaatggcaatccattggctttaaaagttttaggttcagttctccattccagaaatgagcagcaatggaacagtgctctgagaaaactcatgaaggttcctaatgaggaaattcagaatgtcttaagatggagttatgatggattagatgatgaacaaaaaaatatgttcctggacattgcatgctttttccaaggagaggataaagaaaatgttgtgaggctactagatatttgtggtttctatgcagatattggtataagaatccttctagacaaaggtcttataactttttctgacgacaatgaagtgtgtatgcatgacttgatacaagaaatgggctggcaaattgttcatcaggaatctatcaaagatcctggaaggcgtagccgattgtgggatccatacgaaatttatgaagtattgaaaaataacaagggaactgatgcagttgaaggcataatcttagatgtgtctcaaataagggtcttgccattgagctatgagaccttctcaaggatgatcaacataagatttctcaaattctatatggggaggagtaggacatgcaatttgcgccttccttcaggtcttgaatcattgcctaataaattaatgtacctacagtgggatggatacccttccaagtctttgccctcaactttttgtcctgacaaccttgttgtgctttccatgatggaaagccatgttgaaaaactttgggatggaaccaagAGTCTTGCGAGCTTGAAAGAGATCAACCTCTGTGCCTGCAAGAAATTAACTAATCTCCCAGATTTATCTCTAGCGCCAAATCTTGAAACTATAGATGTTTCTCATTGCACAAGTCTTCTTTGTGTTCCCTTATCAATCCAATATGTCAAGAAGCTTCTTTTGTTTAACTTGGAATCCTGCAAGAGTCTTAAGAGTCTTCCAAGAAACATTCACTTGTCTTCTCTTGAAATGTTCATTCTCAGACGTTGTTCAAGTCTCGATGAGTTTTCAGTGACTTCAGTGAACATGACACGCCTGGACTTAAGAGGAACATCAATAACTAGTTTCCCAGAATCAGTTTGGCAGCATCTGAACAAGCTTATTTACTTGAATCTGGAATCCTGCACCAAGCTCAAGAGTCTTACAAGCAACAGAcacttaaaatctcttcaaagactcaatcttagagattgttcaactcttgaggtgttttctgtgacttcggagaacatggaGCCAAAACCTGAGGATTTGCCTCCAATCTTCAGTGTAATATCTTCCTCTGAAAGGCCAAATATGGATGAACCATGGACTTTGTCATCCTTAACAGATTTATCTCTAAAAGGAAGCAGTATTGAGAATTTACCTGCAAGCATCAAAGATCTTCCTAGTCTGAAAAAGCTTACCTTGACCGAGTGCAAGAAGCTTCGGTGTTTACCAAGCCTTCCACCATCCTTGGAAGACTTATCCTTAGATGAAAGTGATACTGAGAGTTTACCTGTAAATATCGAAGATCTTTCTCATTTGAAGAAACTTACTCTGATTAACTACAAGAAGCTTTTGTCTCCACAGGATCTTCTACCATCTTTGAAAACTTCATTACTAAATGAAAATAAAGTTATTTCCCATCTTGTGAGCATGAAAGATCTTTCTCGTCAACAAAACTTTCATCTGGTTAAGTGGAAAAGATGTAATATTGAAAGCTTGCCAATAAGCATAAAACATCTTATGCATTTGAGAAAGATCACCTTAATTGAGTGCAAGAAGCTCCAGGCTGTACCAGAGCTCCCGGCATGCCTGAAATCGTTTTGTGCAGCTGACTGCAAATCACTTGAGATTGTCCAAAGTTCAAAGGCTGTCTTAATAGAAGATAGATATGTGTTCTATTACAATTGCATAAACTTGGATCAAAATTCATGCAACAACATCATCGCAGATGCACCCTTTGGGGCAGCTTATACTTCTTTGCAAGAAGGAACACCTCTTGGTCCTCTCATTTCTGTTTGTTTGCCAGGAACTGAAATCCCAGACTGGTTTAGCCACCGATCATCAAATTCTTCACTGGACATTGAAATTCCTCAACAGTGCTTCATTAATTCAAAGTTCTTAGGTTTCGCTCTGTGCCTTGTAATTGGTGGTTTCCAGCAAAACAGTTATGAAGGCTATGATCCAGATGTCAATTGCTATCACTTTGTGAAGTCAGCCCTTAGTTCTGACCCCAGTGTTCCCTTTCTTGGTCACTGCACAACTGTAATGCAGGTGCCAAAAAGTTTTAAGTCAGATCATATATTTATATGCTACTATCCTGCTTTTAATGCCTCCATACTGCAAGATTTCAAGGATTTAGGCTTGTACTATGATGCCAACAACTTAAGGCTTAGAGTCATCTTTAAATTTAAGGGTCCATCTCAACGGTTGGACATTGTAAAGAAGTGTGGGGTCAGACCTCTGTTGATTGCTGATACTGAAAGGCTTCACATAGAAAGTGAACTACAACTTGAAGAGAAGGGAGTATGA 3741 0.1893 MVVVSSKSSTKLVQSSCSCPPRMVKVSAEAASSSSSSFSSAKKHDVFISFRGEDTRKSFTSHLYAAFQHNKIQTFIDYKLPKGGEISPIILKAIEHSNLSVVVLSKHYASSTWCLRELAKIIEHKKRGGHIVIPVFFKVDPSHVRKQTGTYGKAFEKYERDGKHSMAMLQKWKAALTEVANLVGWNMRNYRTEYELIEEIVKVVMQKLNHIYPTEVKERLVGIDQNLAPIESLLKIRSKEVRIIGIWGMGGLGKTTIANALFAKLSSQYEGSCFLTNVREEFDKRGLGYLRDKLFSEVLEDVNLHISTPRVRSTFVMRRLRQKKVLIVLDDVDNPKKLEYLAAQHDCLGSGSRVIVTTRDKHVLSKGVDEIYEVKGLSLHHAVNLFSLNAFGKTYPKMGFEMLSKQVVDHANGNPLALKVLGSVLHSRNEQQWNSALRKLMKVPNEEIQNVLRWSYDGLDDEQKNMFLDIACFFQGEDKENVVRLLDICGFYADIGIRILLDKGLITFSDDNEVCMHDLIQEMGWQIVHQESIKDPGRRSRLWDPYEIYEVLKNNKGTDAVEGIILDVSQIRVLPLSYETFSRMINIRFLKFYMGRSRTCNLRLPSGLESLPNKLMYLQWDGYPSKSLPSTFCPDNLVVLSMMESHVEKLWDGTKSLASLKEINLCACKKLTNLPDLSLAPNLETIDVSHCTSLLCVPLSIQYVKKLLLFNLESCKSLKSLPRNIHLSSLEMFILRRCSSLDEFSVTSVNMTRLDLRGTSITSFPESVWQHLNKLIYLNLESCTKLKSLTSNRHLKSLQRLNLRDCSTLEVFSVTSENMEPKPEDLPPIFSVISSSERPNMDEPWTLSSLTDLSLKGSSIENLPASIKDLPSLKKLTLTECKKLRCLPSLPPSLEDLSLDESDTESLPVNIEDLSHLKKLTLINYKKLLSPQDLLPSLKTSLLNENKVISHLVSMKDLSRQQNFHLVKWKRCNIESLPISIKHLMHLRKITLIECKKLQAVPELPACLKSFCAADCKSLEIVQSSKAVLIEDRYVFYYNCINLDQNSCNNIIADAPFGAAYTSLQEGTPLGPLISVCLPGTEIPDWFSHRSSNSSLDIEIPQQCFINSKFLGFALCLVIGGFQQNSYEGYDPDVNCYHFVKSALSSDPSVPFLGHCTTVMQVPKSFKSDHIFICYYPAFNASILQDFKDLGLYYDANNLRLRVIFKFKGPSQRLDIVKKCGVRPLLIADTERLHIESELQLEEKGV 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01060 1246 Pfam NB-ARC domain 231 450 IPR002182 GO:0043531
Cca01g01060 1246 Gene3D Ribonuclease Inhibitor 745 820 IPR032675 -
Cca01g01060 1246 Gene3D - 209 371 IPR027417 -
Cca01g01060 1246 Gene3D - 40 208 IPR035897 -
Cca01g01060 1246 Pfam C-JID domain 1078 1223 IPR045344 -
Cca01g01060 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 470 IPR027417 -
Cca01g01060 1246 SUPERFAMILY L domain-like 516 808 - -
Cca01g01060 1246 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 771 937 IPR044974 GO:0006952
Cca01g01060 1246 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 36 770 IPR044974 GO:0006952
Cca01g01060 1246 Pfam TIR domain 43 223 IPR000157 GO:0007165
Cca01g01060 1246 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 771 937 - -
Cca01g01060 1246 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 36 770 - -
Cca01g01060 1246 SMART till_3 43 182 IPR000157 GO:0007165
Cca01g01060 1246 ProSiteProfiles TIR domain profile. 42 208 IPR000157 GO:0007165
Cca01g01060 1246 SUPERFAMILY L domain-like 750 1056 - -
Cca01g01060 1246 SUPERFAMILY Toll/Interleukin receptor TIR domain 33 185 IPR035897 -
Cca01g01060 1246 Pfam Leucine Rich Repeat 636 655 IPR011713 -
Cca01g01060 1246 Gene3D Ribonuclease Inhibitor 552 744 IPR032675 -
Cca01g01060 1246 Gene3D Ribonuclease Inhibitor 842 1027 IPR032675 -
Cca01g01060 1246 Gene3D - 377 460 IPR042197 -
Cca01g01060 1246 PRINTS Disease resistance protein signature 243 258 - -
Cca01g01060 1246 PRINTS Disease resistance protein signature 411 425 - -
Cca01g01060 1246 PRINTS Disease resistance protein signature 868 884 - -
Cca01g01060 1246 PRINTS Disease resistance protein signature 319 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01060 Cca-Chr1 15685580 15694406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01060 38 883 WRKY Transcription Factor Family AT4G12020 34.575 3.11e-126 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01060 - - ccaj:109805736 2051.17