Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01037 ATGGAGAATGTTTTAGGTCTTATCAAACTCCGTATCAAAAGAGGCACTAATCTAAAAGCTTGTGATACTCGTAGCAGTGACCCATATGTTTTTGTCACCATGGCTGAACAGGAACTAAAAACTGGTGTTGTGAAAGATAACTGTAATCCTGAGTGGAATGAAGAATTGACACTTTATGTAAAGGATGTTAACAATCCCATACATCTGACAGTTTCAGACAAAGACACTTTCACTGTAGACGACAAAATGGGCGATGCAGAAATAGACTTAAAACCATATCTTCGTTGTGTGAAGATGGAATTGAACGATCTCCCAGAAGGCCATGTAGTCAAGATTGTTTATCCAGATAGGACTAACTGCCTTGCTGAAGAGAGCAGCTGCATGTGGAAAAATGGAAAAGTCGTCCAAGAGATGAGTTTAAGACTGAGAAATGCCAAGTCTGGGGAAATAATAGTGGAAATTGAGTGGGTTAGTGTTCCAAATTCAAAGGGCTTATCAGAAGTTGATTTTTAG 513 0.3899 MENVLGLIKLRIKRGTNLKACDTRSSDPYVFVTMAEQELKTGVVKDNCNPEWNEELTLYVKDVNNPIHLTVSDKDTFTVDDKMGDAEIDLKPYLRCVKMELNDLPEGHVVKIVYPDRTNCLAEESSCMWKNGKVVQEMSLRLRNAKSGEIIVEIEWVSVPNSKGLSEVDF 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01037 170 Gene3D C2 domain 3 167 IPR035892 -
Cca01g01037 170 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Cca01g01037 170 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 170 IPR044562 -
Cca01g01037 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 157 IPR035892 -
Cca01g01037 170 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 170 - -
Cca01g01037 170 Pfam C2 domain 7 92 IPR000008 -
Cca01g01037 170 SMART C2_3c 7 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01037 Cca-Chr1 15278540 15280273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01037 38 166 C2H2 Transcription Factor Family AT1G70790 58.015 9.05e-51 158