Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca01g01034 | ATGGGTCGCGTGAGAACGAAGACTGTGAAGAAGTCATCACGGCAAGTGATAGAGCGCTACTACTCGCGCATGACACTGGATTTCCACACGAACAAGAAGCTTCTAGAAGAAGTGGCGATCATCCCGTCGAAGAGGCTCCGCAACAAGATCGCGGGGTTCTCGACCCACCTCATGAAGCGCATCCAGAAGGGTCCCGTTCGCGGCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCGCCGCATGGACTTCGTTCCCGAGGTTTCCGCCATCAACACCGACCACATCGAGGTCGACAAGGAGACCCTCGACATGCTCCACTCCCTCGGAATCAACGACCTTTCCGGCATCACCCAGGTTGACCCTGTCCCTGTTCAGCAGACCTTCCCCTTCACCAGGAGGTTGAAGATACACTTTGTCTCAGCTTTGGTTCCTAACACTACTGAAAATGGTGCCTGGTTTGCTGGTGCACTATCATTTAAAATAGAGACAGACAGACAGACAAGAGAGTCTAAGGACGCTCGCTGGCAGCAGCAGCAGTGGATTGCCACCTCACCTCAATTCATTTTATCATCATCGTGCTCGTATTGGAGCCCTGTCATGCCTTTGTCTAAGTTTCGTGGTGTTGATTTCCTTTTGACTACCCTTCGACTTATGCTAAGCCTGAAGGAGTACTCGACTCTGATGGTGGCTTACCTTTGTTTTGATTACCCTTCAGTCATTGCCAAGGTTGAAGGAATGTGTCTAGTGTTGGTCTTGACCAAGAGGTAA | 771 | 0.5162 | MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKLLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEVSAINTDHIEVDKETLDMLHSLGINDLSGITQVDPVPVQQTFPFTRRLKIHFVSALVPNTTENGAWFAGALSFKIETDRQTRESKDARWQQQQWIATSPQFILSSSCSYWSPVMPLSKFRGVDFLLTTLRLMLSLKEYSTLMVAYLCFDYPSVIAKVEGMCLVLVLTKR | 256 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca01g01034 | 256 | ProSitePatterns | Ribosomal protein S17e signature. | 41 | 56 | IPR018273 | GO:0003735|GO:0005840|GO:0006412 | |
| Cca01g01034 | 256 | PANTHER | 40S RIBOSOMAL PROTEIN S17 | 1 | 133 | - | - | |
| Cca01g01034 | 256 | Hamap | 30S ribosomal protein S17e [rps17e]. | 1 | 63 | IPR001210 | GO:0003735|GO:0005840|GO:0006412 | |
| Cca01g01034 | 256 | Gene3D | - | 1 | 62 | IPR036401 | GO:0003735|GO:0005840|GO:0006412 | |
| Cca01g01034 | 256 | SUPERFAMILY | Rps17e-like | 1 | 62 | IPR036401 | GO:0003735|GO:0005840|GO:0006412 | |
| Cca01g01034 | 256 | PANTHER | 40S RIBOSOMAL PROTEIN S17 | 1 | 133 | IPR001210 | GO:0003735|GO:0005840|GO:0006412 | |
| Cca01g01034 | 256 | Pfam | Ribosomal S17 | 1 | 120 | IPR001210 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca01g01034 | Cca-Chr1 | 15192184 | 15204473 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca01g01034 | 1 | 122 | Cytoplasmic Ribosomal Protein Gene Family | AT2G05220 | 87.705 | 5.43e-75 | 223 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca01g01034 | K02962 | - | gmx:100527036 | 259.225 |