Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01033 ATGTCTGATTCATTCGCTAGTACCTTTCCCTCTTCCACTCCAAACTCCACCCACAATTCTCATGCAGCCCCCAAAATCGCCACCTTCTGCTCAATAGCACAACCTTATTGTATTTGCACCCACTGTAACCACATCCTCACCTTCAACCAACATGTTGGTCATGTAGCAGAGGAAGGGACAAATAACACAGGGTCCCATGTGCAGTCTCAGCAAAGCACCAGGTGGAGTCCAACACCAGTTCAGTTACTAGTCCTTGAGGAATTGTATAGGCAAGGAACAAAAACACCATCGGCTGAACAAATTCAACAAATAGCTTCACAGTTGCGCCAGTTTGGGAAGATCGAAGGGAAGAACGTGTTCTACTGGTTCCAGAATCACAAGGCGAGGGAGAGACAGAAGAGGCGTCGCAGGGAGATGGAGGAAAACGCTGCAGCTTCATCTAGTgaagGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTGGACATGCAGAGGAATCTGCTGCACTGGACATAGCAGAAAAGGGATCAAATGGGTGGACTCAAGTTGATGAGAGAGGCATGCAAGTTTTGAGGAAAAACTTATCAGAAAGGCAAGCTAAGTGGCAAGATATGGAAATGCAAATGCCTTGTGTCCCTCCCCTTGTTACTATGGCAGCTCCcacaactacagtagcagcacacagaacacataacacaaaaATTTTAACCCCTCAAAATTATAATAATTTACCATATGTACTCAACAGAGAAAATTTAAGCTATTGTGATGGAGAAAATGCAGATCCTCGGACCCTGGACCTATTTCCACTTAAGAGGGATGACCAAGATGGCATTTGTATTGCTGAGAGGAAATCTATGTTCTGTGCAAGTGCCTCTATGGACACTGAAATCACCTCCAACCAGTTTTTTGAGTTTCTTCCTTTAAGGAATTAG 966 0.4275 MSDSFASTFPSSTPNSTHNSHAAPKIATFCSIAQPYCICTHCNHILTFNQHVGHVAEEGTNNTGSHVQSQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENAAASSSEGLKETGCGVKETKKWASTSNCSGHAEESAALDIAEKGSNGWTQVDERGMQVLRKNLSERQAKWQDMEMQMPCVPPLVTMAAPTTTVAAHRTHNTKILTPQNYNNLPYVLNRENLSYCDGENADPRTLDLFPLKRDDQDGICIAERKSMFCASASMDTEITSNQFFEFLPLRN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01033 321 Pfam Homeodomain 72 132 IPR001356 GO:0003677
Cca01g01033 321 SMART HOX_1 70 137 IPR001356 GO:0003677
Cca01g01033 321 MobiDBLite consensus disorder prediction 1 20 - -
Cca01g01033 321 CDD homeodomain 73 128 IPR001356 GO:0003677
Cca01g01033 321 Gene3D - 56 147 - -
Cca01g01033 321 ProSiteProfiles 'Homeobox' domain profile. 68 133 IPR001356 GO:0003677
Cca01g01033 321 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 12 321 - -
Cca01g01033 321 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 12 321 IPR044555 GO:0003700|GO:0099402
Cca01g01033 321 SUPERFAMILY Homeodomain-like 66 135 IPR009057 -
Cca01g01033 321 MobiDBLite consensus disorder prediction 130 154 - -
Cca01g01033 321 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01033 Cca-Chr1 15186183 15188867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01033 61 321 Wox Gene Family AT3G18010 33.550 2.26e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca01g01033 Homeodomain 3.9e-19 CL0123