Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01028 ATGGAGGCTAATGCTTGCACTATGCATTCCCATTGCTTAGAAATGACCATGGAAGTGCACCAAGTTGTTCCACCACCCCACAAGAGTACCCTACAGAAACTTAAGGCCAGACTCAAGGAAACCTTTTTTCCTGATGATCCTCTGCGCCAATTCAAGGGACAACCTCTTAAGAGAAAGCTAATCCTTGGAGCTCAATATGTGTTTCCTATTCTTCAATGGGGTCCTAAGTACAACCTTAAACTCTTTAAATCTGATCTTGTTTCTGGTCTCACTATTGCTAGCTTGGCCATCCCACAGGGAATAAGTTATGCTAAGCTTGCAAGTCTTCCTCCAATTGTGGGACTTTATTCTAGTTTTGTTCCCCCACTTGTTTATGCTGTTCTAGGAAGCTCAAAGGACCTAGCAGTAGGACCTGTTTCTATTGCTTCTCTTGTGTTGGGATCCATGCTGAGACAAGAAGTGTCTCCCACAGCAGAACCTGTTCTGTTTCTTCAGCTAGCTTTTACTTCAACGTTATTTGCTGGTCTCTTTCAAGCTTCTCTTGGAATCCTTAGGCTAGGCTTTATCATTGATTTTCTATCTAAGGCCATCCTTATTGGATTCATGGCTGGAGCTGCTATAATTGTCTCACTGCAACAGTTAAAGAGTCTGCTTGGAATCACACATTTCTCAAATCAGATGGGGCTAGTTCCTGTCATGAGTTCTGTTTTTCACAACATACATGAGTGGTCATGGCAAACAATCTTGATGGGGATTTGTTTCCTGATGCTACTACTATTAGCGAGACACGTTAGTATCAGAAAACCAAAACTATTCTGGGTCTCAGCTGGAGCTCCTCTTGCATCTGTCATCATTTCTACTCTTCTGGTTTTTGCAATTAAGGCTCAAAATCATGGCATCAGTGTAATTGGAAAATTGCAACAAGGAATAAATCCTCCTTCATGGAATATGTTGCTTTTACATGGAAGTCACCTAGGCCTAGTCATGAAAACTGGGATTATCACTGGAATTTTGTCCCTCACTGAAGGTATTGCAGTAGGAAGGACATTTGCAGCTCTTAGAAACTACAAAGTTGATGGAAATAAGGAAATGATGGCAATTGGATTTATGAATGTGGTTGGCTCTTTCACTTCTTGCTATGTTACAACAGGTGCTTTCTCTCGGTCAGCTGTTAATAACAATGCAGGAGCAAAAACAGCTGTGTCAAATGTAGTGATGTCTGTGACAGTCATGGTAACACTCCTTTTTCTCATGCCATTGTTCCAATACACACCTAATGTCGTGTTGGGTGCAATTATAGTCACAGCGGTAATCGGCCTCATTGATGTCCCTGCTGCTTGTAACATTTGGAGGATAGACAAATTTGATTTCCTTGTGATGTTGGTTGCTTTCTTGGGTGTTCTTTTTATCTCTGTCCAGGGAGGCCTTGCTCTTGCTGTCGGGTTATCAACTTTTAAGATACTCCTGCAAATTACAAGGCCGAAAACAGTAATGTTGGGAAAGATACCAGGAACAGACATATATAGAAATCTTCACCAATACAAGGAAGCTGTGAGAATACCTGGTTTTCTTATTTTAAGCATCGAGGCTCCCATCAATTTTGCTAACATTACATATCTCAATGAGAGAACATTACGATGGATTGAAGAAGAGGAAGACAGCATAAAGGAACAACCAAGCCTTCGATTTTTAATATTGGAAATGTCAGGTAACTTGATTAGTTTTTGA 1728 0.4086 MEANACTMHSHCLEMTMEVHQVVPPPHKSTLQKLKARLKETFFPDDPLRQFKGQPLKRKLILGAQYVFPILQWGPKYNLKLFKSDLVSGLTIASLAIPQGISYAKLASLPPIVGLYSSFVPPLVYAVLGSSKDLAVGPVSIASLVLGSMLRQEVSPTAEPVLFLQLAFTSTLFAGLFQASLGILRLGFIIDFLSKAILIGFMAGAAIIVSLQQLKSLLGITHFSNQMGLVPVMSSVFHNIHEWSWQTILMGICFLMLLLLARHVSIRKPKLFWVSAGAPLASVIISTLLVFAIKAQNHGISVIGKLQQGINPPSWNMLLLHGSHLGLVMKTGIITGILSLTEGIAVGRTFAALRNYKVDGNKEMMAIGFMNVVGSFTSCYVTTGAFSRSAVNNNAGAKTAVSNVVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVIGLIDVPAACNIWRIDKFDFLVMLVAFLGVLFISVQGGLALAVGLSTFKILLQITRPKTVMLGKIPGTDIYRNLHQYKEAVRIPGFLILSIEAPINFANITYLNERTLRWIEEEEDSIKEQPSLRFLILEMSGNLISF 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01028 575 Gene3D STAS domain 493 572 IPR036513 -
Cca01g01028 575 ProSiteProfiles STAS domain profile. 513 570 IPR002645 -
Cca01g01028 575 Pfam STAS domain 514 570 IPR002645 -
Cca01g01028 575 PANTHER SULFATE TRANSPORTER 18 570 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca01g01028 575 Pfam Sulfate permease family 82 462 IPR011547 GO:0016021
Cca01g01028 575 ProSitePatterns SLC26A transporters signature. 111 132 IPR018045 GO:0008271|GO:0008272
Cca01g01028 575 PANTHER BNAA09G30120D PROTEIN 18 570 IPR030313 -
Cca01g01028 575 TIGRFAM sulP: sulfate permease 69 569 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01028 Cca-Chr1 15091434 15100052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01028 14 570 Inorganic Solute Cotransporters AT3G15990 68.336 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01028 K17471 - gmx:100787284 1036.94