Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01023 ATGGATGATGAAGTTGTTCAGCGAGTGTTTCATGAAGGAGGACGCGATTACTTCCAACAACAGCCTTCAACTTCTTCGTCTTCCTCTTCCATCCTTCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCTATCCAAGAACTCCGAGAGAAAAAGGATGGCCTTGTTAGTATTGGCATTGGTGGTCCAAGTGGATCTGGTAAAACAAGCTTAGCAGAAAAGGTAGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAACTATCGTGATGGAGTTGATGAAGGGAATGATCTAGACTCTATAGATTTTGATACCCTGATCAAGAATCTTGAGGATTTGACTAAAGGCAATGATACATTAATCCCAGAGTTTGACTATCAGCTAAAAAGGCGTGTTGGTTATAAAGCAATAAAGAGCACTTCATCTGGGGTGGTAATAGTTGATGGCACATATGCATTGCATGCAAAATTGCGGTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGAGTTCATTTTAGTCTGCTTTCTAAAGTTCGCTACGATATTGGAGATTCTTGTTCACTGGATTACCTTATAGATAGCATTTTCCCATTATTTAGGAAAGACATTGAGCCAGATCTTCATCATGCGCAGATCAGAATTAATAACAGCTTTGTCTCATCATTCAGAGAGGCAATCTACAAGGTTAAATGCAGAAGTGAGTCTTCAGATGATTCTGGTTCTGCTTTTCAAGGAAATGAAGCCCAGACAGATAATTTTATTGAAATGTACCTTAGACCACCTTCAGCAAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGACAGTCTGGGATTAGATATTATTTATCACTTGGTGACCAGAGGATTGTTGACAAGAATTTCATTATCAGGCCTAAAGCTGAATTTGAGGTTGGTCGAATGACATTGGGTGGATTATTGGCTCTTGGGTACACTGTTGTGGTTAGTTATAAACGTGCATCCACTACTGTCAATAATGGGAAGGTTTCGTTGTCTTTTGAAACCATTGATGTTCTTGGCGAGACATTCATGGTGATGAGAGGAACTAATAGAAAAACTGTTGGAACAGAAGCATTAAGGATGGGTATAAATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTTGAAAGAAAAGGTGTACCTCGACTTAGTACACCACCACTTGTGTCTAATGCAACTGTAGCTGGTAGTCAAGAAACAGTGATCATTGCACCAAAGCCAATCCGTGTTACTCCTGACCTTGGTACTGGGATTGATGATTTATCTCAGCCGTGGACTCGATCCCCAACAAAATCTAAAATGGAACCTGTTGTGGCTACATGGCATTTCATATCTTCAGATTCCTCCCAGCCTGACAACTCAGTCCTAGATCCTTCATCTTTCAGGGATAGTATTAGGCTTGCTCCAATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCAATACAAGCATTGTTGGAGAATAAAGGTGTCCCAGTCATAGTTGGAATTGGAGGTCCAAGTGGCTCTGGAAAGACTAGTTTGGCTCATAAAATGGCAAATATAATTGGTTGTGAAGTAGTTTCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGACTTCAGTGCACTTGATTTATCTTTGCTATCAAAGAATATTGATGACATAAGAAATGGTCAAAGAACAAAAGTGCCTATATTTGACTTGGAAAGTGGTGCTCGGAGTGGTTTCAAGGAACTTGAAGTTTCTGAAGATTGTGGTGTGATTATATTTGAAGGCGTCTTTGCTTTGCATCCTGATATTCGAATATCACTTGACTTGTGGATTGCTGTTGTTGGAGGTGTTCATTCACATTTGATTTCACGAGTTCAAAGAGATAAGAGTAAAGTGGGATGTTTTATTTCCCAAAATGAGATCATGATGACTGTGTTTCCTATGTTCCAACAGCTTATTGAACCTCATCTTGTTCATGCACATCTTAAAATTCGAAATGACTTTGACCCTGTGCTTTCTCCTGAGAGTTCATTATTTGTATTAAAGAGTAACAAAAAAGTAGCATATCAAGATATTGTTTCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAATTTATTGATATTTATATAAGGCTCCCTGGGATCCCTTCTAATGGGCAATTGAGAGATAGTGATTGTATTCGAGTCAGAATATGTGAAGGCAGATTTGCATTGCTGATACGAGAGCCTATCAAAGAAGGGAACTTTATCATTCAGCCTAAAGTGGATTTTGATATAAGCATTAGTACGGTTGCTGGTCTTCTTAATCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTATCAAGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTCCCTGGCCCTTACATTCAGATAAAGGGTGTTAATAAAGATGCAGTGGAAGCAGCAGGTTCAATGCTTAAATTGGATGGTTCGTATACTACTAAGAGTTATCTTGAAATAATTTTGGAAAGACTACCAGCATTAGAAAGAACTTCTGGTGGAATTCATTCTCAGCAATCAGCAAGGCTGCTAGAGATTGTTGAATTTATTCAATCTCAGGGATGTAGCTCTGCTTCAGAGTCCTCATCAAGTAGGGTAGTCTCTCCAATTGAAGGGATTATTGAGGAGATGCAATCAAGGATTAGAAGGCTTGAAAGATGGTTAGCTATAAATACGGTTCTATGGACATTTCTTATGTCTGCCCTTGTTGGTTATTCACTTTATCAAAGGCGGCGTCAATAA 2856 0.3869 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVSIGIGGPSGSGKTSLAEKVASVIGCTVISMENYRDGVDEGNDLDSIDFDTLIKNLEDLTKGNDTLIPEFDYQLKRRVGYKAIKSTSSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKDIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESSDDSGSAFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTTVNNGKVSLSFETIDVLGETFMVMRGTNRKTVGTEALRMGINGPWITKSYLEMILERKGVPRLSTPPLVSNATVAGSQETVIIAPKPIRVTPDLGTGIDDLSQPWTRSPTKSKMEPVVATWHFISSDSSQPDNSVLDPSSFRDSIRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFSALDLSLLSKNIDDIRNGQRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVFALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSKVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDIVSILDPAKFCSSVQKFIDIYIRLPGIPSNGQLRDSDCIRVRICEGRFALLIREPIKEGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGPYIQIKGVNKDAVEAAGSMLKLDGSYTTKSYLEIILERLPALERTSGGIHSQQSARLLEIVEFIQSQGCSSASESSSSRVVSPIEGIIEEMQSRIRRLERWLAINTVLWTFLMSALVGYSLYQRRRQ 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01023 951 Gene3D - 702 863 - -
Cca01g01023 951 PRINTS Uridine kinase signature 516 533 - -
Cca01g01023 951 PRINTS Uridine kinase signature 543 554 - -
Cca01g01023 951 PRINTS Uridine kinase signature 637 647 - -
Cca01g01023 951 CDD UMPK_like 75 226 - -
Cca01g01023 951 PANTHER URIDINE KINASE 603 942 - -
Cca01g01023 951 PANTHER URIDINE KINASE 2 419 - -
Cca01g01023 951 PANTHER URIDINE KINASE 476 602 - -
Cca01g01023 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 686 IPR027417 -
Cca01g01023 951 CDD UMPK_like 518 686 - -
Cca01g01023 951 Pfam Phosphoribulokinase / Uridine kinase family 65 205 IPR006083 GO:0005524|GO:0016301
Cca01g01023 951 Pfam Phosphoribulokinase / Uridine kinase family 518 683 IPR006083 GO:0005524|GO:0016301
Cca01g01023 951 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 419 - -
Cca01g01023 951 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 476 602 - -
Cca01g01023 951 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 603 942 - -
Cca01g01023 951 Gene3D - 63 243 IPR027417 -
Cca01g01023 951 SMART AAA_5 515 659 IPR003593 -
Cca01g01023 951 SMART AAA_5 61 211 IPR003593 -
Cca01g01023 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 175 IPR027417 -
Cca01g01023 951 Gene3D - 515 692 IPR027417 -
Cca01g01023 951 ProSiteProfiles CYTH domain profile. 692 861 IPR023577 -
Cca01g01023 951 SUPERFAMILY CYTH-like phosphatases 724 858 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01023 Cca-Chr1 15008693 15030240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01023 511 674 PRT Gene Family AT1G55810 26.966 1.57e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01023 - - gmx:100778905 1716.44