Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01018 ATGGCGTCAATAATCTCCTTCATCCTCAACACCCTTTTGTTCCTCTGCTTCTGTTCCTCTTTCCCACTCTCAACCCCTTCATTCCCCAAACAAGCCCTCCCCACTATGCATGGTTACCTTCCAATAAACCCCACTTCCACTTCTTCAATTTTCTACGCTTTCTATGAAGCACACAACTCCACTTTACCCCTCTCTCAAACCCCACTTCTCATTTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGCTTGGTAACTTGTACGAACTTGGACCCTGGCGTGTCACTGAATCCCTCACCCTTCAACCCAACCCTGGTGCTTGGAACAGAATCTTTGGCCTTCTTTTTCTTGATAGTCCCATTGGATCTGGCTTCAGCGTCGCCGCAACACCAGAAGAGATTCCAAAGGATCAAAACGCCGTCGCAGAGCACCTTTTTGTTGCTATAACCAGGTTTGTTCAACTTGACCCTGCTTTCAAGCATCGCCCCATTTATATTACTGGGGAAAGCTATGCTGGGAAGTATGTGCCTGCTATTGGGTATCACATATTGAATAAAAATGCAAACTTGGGGGTTTCTGAAAGAGTGAATTTGGCTGGTGTGGCTATTGGGGATGGGTTAACTGACCCTGAGACTCAAGTTGCTACTCACGCTTTGAATGCTTATTATGTTGGGTTGATCAATGAGAGACAAAAGAATGTGTTGGAGAAAGCTCAATTGGAAGCAGTTAGGTTGACCCAATTGGGGAATTGGAGTGAAGCAACGGATGCGAGAAGCAAAGTGTTGACAATGTTGGAAGACATGACAGGGTTGGCTACTTTGTATGACTATACAAGGAAAGTTCCTTATAGGGAAGATTTGGTTGAAAAATTCTTGAACATTGCTGAGGTGAAGAAGGCTTTGGGGGTGAATGAGTCGTTTGTGTATGAGGTGTGTAGTGATGTTGTTGGGGCTGCTTTGCATGCTGATGTGATGAAGAGTGTGAAGTATATGGTGGAGCACTTGGTGAGGAGGAGCAGGGTGTTGTTATATCAAGGTGAGTATGATTTGAGGGATGGTGTGGTTCAAACAGAGGTTTGGGTGAAGACAATGAAATGGGAAGGGATTGAGGAGTTTCTGAATGCTGAAAGGAAGATATGGAGGGTTAATGGAGAGGTTGTTGGGTATGTGCAAAAGTGGAAATCTCTCACTAATGTTGTGGTTTTGGGTGCtgggcatcttttgcctactgatcaagctgttaattctcaagcaatgattgaagattgggtcttacaaaggggtttgtttcaaaatgtgtacaaggaaaagtctatatttgttgtgtaa 1326 0.4148 MASIISFILNTLLFLCFCSSFPLSTPSFPKQALPTMHGYLPINPTSTSSIFYAFYEAHNSTLPLSQTPLLIWLQGGPGCSSMLGNLYELGPWRVTESLTLQPNPGAWNRIFGLLFLDSPIGSGFSVAATPEEIPKDQNAVAEHLFVAITRFVQLDPAFKHRPIYITGESYAGKYVPAIGYHILNKNANLGVSERVNLAGVAIGDGLTDPETQVATHALNAYYVGLINERQKNVLEKAQLEAVRLTQLGNWSEATDARSKVLTMLEDMTGLATLYDYTRKVPYREDLVEKFLNIAEVKKALGVNESFVYEVCSDVVGAALHADVMKSVKYMVEHLVRRSRVLLYQGEYDLRDGVVQTEVWVKTMKWEGIEEFLNAERKIWRVNGEVVGYVQKWKSLTNVVVLGAGHLLPTDQAVNSQAMIEDWVLQRGLFQNVYKEKSIFVV 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01018 441 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 16 430 IPR001563 GO:0004185|GO:0006508
Cca01g01018 441 Pfam Serine carboxypeptidase 33 423 IPR001563 GO:0004185|GO:0006508
Cca01g01018 441 Gene3D alpha/beta hydrolase 23 437 IPR029058 -
Cca01g01018 441 PANTHER CARBOXYPEPTIDASE 16 430 - -
Cca01g01018 441 Coils Coil 227 247 - -
Cca01g01018 441 PRINTS Carboxypeptidase C serine protease (S10) family signature 103 115 IPR001563 GO:0004185|GO:0006508
Cca01g01018 441 PRINTS Carboxypeptidase C serine protease (S10) family signature 116 126 IPR001563 GO:0004185|GO:0006508
Cca01g01018 441 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 176 IPR001563 GO:0004185|GO:0006508
Cca01g01018 441 PRINTS Carboxypeptidase C serine protease (S10) family signature 395 408 IPR001563 GO:0004185|GO:0006508
Cca01g01018 441 SUPERFAMILY alpha/beta-Hydrolases 34 424 IPR029058 -
Cca01g01018 441 ProSitePatterns Serine carboxypeptidases, serine active site. 165 172 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01018 Cca-Chr1 14939668 14941178 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01018 286 423 Calmodulin-binding Proteins AT2G22960 20.144 1.62e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01018 K09645 - gmx:100780822 757.673